PF00440

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00440
Protein list: lists the 135 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00440
Description Bacterial regulatory proteins, tetR family

Occurence in the database

PF00440 is associated with 135 different proteins
The 135 proteins are classified into 20 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_617 FBDBKF_01255 241674 242267 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
1 group_2528 FBDBKF_01765 42512 43150 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
2 group_2579 FBDBKF_02550 208214 208810 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
3 group_2586 FBDBKF_02655 228257 228853 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
4 group_3216 FBDBKF_02800 256693 257307 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
5 group_213 FBDBKF_02875 269881 270459 1 tetR TetR family transcriptional regulator Morganella morganii S1
6 group_2609 FBDBKF_02885 270943 271533 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
7 group_82 FBDBKF_04895 187142 187900 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
8 group_1352 FBDBKF_07895 108316 108963 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
9 group_2808 FBDBKF_08795 139882 140469 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
10 group_1526 FBDBKF_09540 6362 7048 1 cecR transcriptional regulator CecR Morganella morganii S1
11 group_82 FBDBKF_10875 4385 5017 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
12 group_1705 FBDBKF_11530 103936 104547 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
13 group_1781 FBDBKF_12140 83185 83841 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S1
14 group_2162 FBDBKF_15975 48050 48697 1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella morganii S1
15 group_361 FBDBKF_16080 3250 3843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
16 group_2191 FBDBKF_16225 34381 34974 -1 slmA nucleoid occlusion factor SlmA Morganella morganii S1
17 group_3006 FBDBKF_17470 28347 28976 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
18 group_377 FBDBKF_18770 91 684 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
19 group_2467 FBDBKF_19940 7910 8572 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
20 group_377 FBDBKF_20460 625 1218 1 tetC tetracyline resistance-associated transcriptional repressor TetC Morganella morganii S1
21 group_3743 FBDBKF_20470 2618 2935 1 HTH tetR-type domain-containing protein Morganella morganii S1
22 group_617 EHELCC_00290 66601 67194 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
23 group_2528 EHELCC_02235 430332 430970 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
24 group_2579 EHELCC_03020 596034 596630 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
25 group_2586 EHELCC_03125 616077 616673 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
26 group_3216 EHELCC_03270 644513 645127 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
27 group_213 EHELCC_03345 657701 658279 1 tetR TetR family transcriptional regulator Morganella morganii S2
28 group_2609 EHELCC_03355 658763 659353 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
29 group_1526 EHELCC_04340 198327 199013 1 cecR transcriptional regulator CecR Morganella morganii S2
30 group_82 EHELCC_05350 54451 55083 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
31 group_82 EHELCC_06185 246599 247357 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
32 group_2467 EHELCC_07675 6850 7512 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
33 group_2808 EHELCC_12730 23256 23843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
34 group_1352 EHELCC_13725 82510 83157 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
35 group_1781 EHELCC_14165 50864 51520 1 fabR HTH-type transcriptional repressor FabR Morganella morganii S2
36 group_361 EHELCC_16115 3250 3843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
37 group_2191 EHELCC_16260 34381 34974 -1 slmA nucleoid occlusion factor SlmA Morganella morganii S2
38 group_377 EHELCC_16965 92 685 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
39 group_3006 EHELCC_17365 28347 28976 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
40 group_1705 EHELCC_17450 2279 2890 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
41 group_2162 EHELCC_18580 5484 6131 1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella morganii S2
42 group_2609 NLDBIP_00105 20783 21373 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
43 group_213 NLDBIP_00115 21857 22435 -1 tetR TetR family transcriptional regulator Morganella morganii S4
44 group_3216 NLDBIP_00190 35009 35623 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
45 group_2586 NLDBIP_00335 63463 64059 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
46 group_2579 NLDBIP_00440 83506 84102 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
47 group_2528 NLDBIP_01225 249166 249804 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
48 group_617 NLDBIP_03170 612942 613535 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
49 group_1526 NLDBIP_04340 198123 198809 1 cecR transcriptional regulator CecR Morganella morganii S4
50 group_82 NLDBIP_05670 95516 96148 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
51 group_82 NLDBIP_06505 287664 288422 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
52 group_2467 NLDBIP_08000 6850 7512 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
53 group_2808 NLDBIP_13070 23256 23843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
54 group_1352 NLDBIP_14170 103385 104032 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
55 group_1781 NLDBIP_15260 54801 55457 1 fabR HTH-type transcriptional repressor FabR Morganella morganii S4
56 group_2191 NLDBIP_17080 27196 27789 1 slmA nucleoid occlusion factor SlmA Morganella morganii S4
57 group_361 NLDBIP_17225 58327 58920 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
58 group_2162 NLDBIP_17410 35489 36136 1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella morganii S4
59 group_3006 NLDBIP_17830 13820 14449 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
60 group_377 NLDBIP_18345 91 684 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
61 group_1705 NLDBIP_18660 3026 3637 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
62 group_2528 LHKJJB_00810 142881 143519 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
63 group_2579 LHKJJB_01595 308583 309179 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
64 group_2586 LHKJJB_01700 328626 329222 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
65 group_3216 LHKJJB_01845 357062 357676 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
66 group_213 LHKJJB_01920 370250 370828 1 tetR TetR family transcriptional regulator Morganella morganii S3
67 group_2609 LHKJJB_01930 371312 371902 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
68 group_82 LHKJJB_02550 73040 73672 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
69 group_82 LHKJJB_03385 265188 265946 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
70 group_617 LHKJJB_04685 220183 220776 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
71 group_2467 LHKJJB_06265 249647 250309 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
72 group_1352 LHKJJB_08680 55717 56364 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
73 group_377 LHKJJB_09280 191645 192238 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
74 group_2808 LHKJJB_13485 138600 139187 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
75 group_1526 LHKJJB_14290 136569 137255 -1 cecR transcriptional regulator CecR Morganella morganii S3
76 group_1781 LHKJJB_15350 83185 83841 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S3
77 group_2191 LHKJJB_17000 30298 30891 1 slmA nucleoid occlusion factor SlmA Morganella morganii S3
78 group_361 LHKJJB_17145 61429 62022 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
79 group_2162 LHKJJB_17250 20052 20699 -1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella morganii S3
80 group_3006 LHKJJB_17750 13818 14447 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
81 group_1705 LHKJJB_17890 2279 2890 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
82 group_2528 HKOGLL_00850 148392 149030 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
83 group_2579 HKOGLL_01635 314094 314690 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
84 group_2586 HKOGLL_01740 334137 334733 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
85 group_3216 HKOGLL_01885 362573 363187 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
86 group_213 HKOGLL_01960 375761 376339 1 tetR TetR family transcriptional regulator Morganella morganii S5
87 group_2609 HKOGLL_01970 376823 377413 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
88 group_617 HKOGLL_02360 66806 67399 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
89 group_82 HKOGLL_06860 187052 187810 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
90 group_1352 HKOGLL_08230 55717 56364 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
91 group_377 HKOGLL_08830 191645 192238 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
92 group_2808 HKOGLL_11545 23256 23843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
93 group_1526 HKOGLL_12245 7143 7829 1 cecR transcriptional regulator CecR Morganella morganii S5
94 group_1781 HKOGLL_14470 69848 70504 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S5
95 group_82 HKOGLL_15930 96480 97112 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
96 group_361 HKOGLL_16695 3250 3843 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
97 group_2191 HKOGLL_16840 34381 34974 -1 slmA nucleoid occlusion factor SlmA Morganella morganii S5
98 group_2162 HKOGLL_17145 35489 36136 1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella morganii S5
99 group_3006 HKOGLL_17760 13818 14447 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
100 group_1705 HKOGLL_18760 21341 21952 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
101 group_2467 HKOGLL_19120 7916 8578 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
102 group_1526 F4V73_RS00825 171096 171782 -1 cecR transcriptional regulator CecR Morganella psychrotolerans
103 group_2467 F4V73_RS02425 513190 513852 1 CerR family C-terminal domain-containing protein Morganella psychrotolerans
104 group_2528 F4V73_RS04095 866492 867127 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
105 group_2579 F4V73_RS04975 1060169 1060768 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
106 group_2586 F4V73_RS05155 1099600 1100196 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
107 group_213 F4V73_RS05320 1129865 1130443 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
108 group_2609 F4V73_RS05330 1130961 1131563 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
109 group_617 F4V73_RS07295 1522686 1523279 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
110 group_1705 F4V73_RS08130 1687673 1688281 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
111 group_2808 F4V73_RS19600 107970 108557 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
112 group_82 F4V73_RS11535 455887 456531 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
113 group_1705 F4V73_RS11545 458497 459078 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
114 group_1352 F4V73_RS13085 233499 234149 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
115 group_377 F4V73_RS13820 398406 399005 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
116 group_2162 F4V73_RS16335 81656 82303 -1 acrR multidrug efflux transporter transcriptional repressor AcrR Morganella psychrotolerans
117 group_3006 F4V73_RS16645 152364 152990 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
118 group_1781 F4V73_RS16935 8442 9098 -1 fabR HTH-type transcriptional repressor FabR Morganella psychrotolerans
119 group_2191 F4V73_RS17375 105929 106522 1 slmA nucleoid occlusion factor SlmA Morganella psychrotolerans
120 group_2162 PMI_RS00645 166366 167010 1 acrR multidrug efflux transporter transcriptional repressor AcrR Proteus mirabilis HI4320
121 group_1352 PMI_RS00740 190128 190763 1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320
122 group_82 PMI_RS01470 360449 361141 -1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320
123 group_1526 PMI_RS03050 672125 672823 -1 cecR transcriptional regulator CecR Proteus mirabilis HI4320
124 group_377 PMI_RS05690 1238362 1238985 1 TetR family transcriptional regulator Proteus mirabilis HI4320
125 group_617 PMI_RS06060 1328397 1328993 1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320
126 group_213 PMI_RS07070 1542890 1543492 -1 betI transcriptional regulator BetI Proteus mirabilis HI4320
127 group_2467 PMI_RS09200 2004510 2005184 -1 CerR family C-terminal domain-containing protein Proteus mirabilis HI4320
128 group_361 PMI_RS10995 2420922 2421509 -1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320
129 group_3743 PMI_RS11865 2620845 2621468 -1 tetR(J) tetracycline resistance transcriptional repressor TetR(J) Proteus mirabilis HI4320
130 group_361 PMI_RS13430 2974801 2975394 -1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320
131 group_361 PMI_RS14640 3243886 3244437 -1 TetR family transcriptional regulator Proteus mirabilis HI4320
132 group_213 PMI_RS15255 3384931 3385569 -1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein Proteus mirabilis HI4320
133 group_2191 PMI_RS15590 3466656 3467261 -1 slmA nucleoid occlusion factor SlmA Proteus mirabilis HI4320
134 group_1781 PMI_RS16035 3564239 3564919 1 fabR HTH-type transcriptional repressor FabR Proteus mirabilis HI4320