Homologs in group_2125

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15975 FBDBKF_15975 63.1 Morganella morganii S1 acrR multidrug efflux transporter transcriptional repressor AcrR
EHELCC_18580 EHELCC_18580 63.1 Morganella morganii S2 acrR multidrug efflux transporter transcriptional repressor AcrR
NLDBIP_17410 NLDBIP_17410 63.1 Morganella morganii S4 acrR multidrug efflux transporter transcriptional repressor AcrR
LHKJJB_17250 LHKJJB_17250 63.1 Morganella morganii S3 acrR multidrug efflux transporter transcriptional repressor AcrR
HKOGLL_17145 HKOGLL_17145 63.1 Morganella morganii S5 acrR multidrug efflux transporter transcriptional repressor AcrR
F4V73_RS16335 F4V73_RS16335 61.7 Morganella psychrotolerans acrR multidrug efflux transporter transcriptional repressor AcrR

Distribution of the homologs in the orthogroup group_2125

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2125

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACT1 2.72e-84 251 59 0 201 3 acrR HTH-type transcriptional regulator AcrR Shigella flexneri
P0ACS9 2.72e-84 251 59 0 201 1 acrR HTH-type transcriptional regulator AcrR Escherichia coli (strain K12)
P0ACT0 2.72e-84 251 59 0 201 3 acrR HTH-type transcriptional regulator AcrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q88N29 5.71e-44 149 38 0 209 3 ttgR Probable HTH-type transcriptional regulator TtgR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9KJC4 5.71e-44 149 38 0 209 3 arpR Probable HTH-type transcriptional regulator ArpR Pseudomonas putida
Q9AIU0 8.61e-44 148 38 0 209 1 ttgR HTH-type transcriptional regulator TtgR Pseudomonas putida (strain DOT-T1E)
P0C068 1.23e-42 145 38 0 209 3 mepR Probable HTH-type transcriptional regulator MepR Pseudomonas putida
P0ACT2 4.85e-37 131 36 1 201 4 envR Probable acrEF/envCD operon repressor Escherichia coli (strain K12)
P0ACT3 4.85e-37 131 36 1 201 3 envR Probable acrEF/envCD operon repressor Escherichia coli O157:H7
P39897 1.67e-28 109 30 0 207 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
Q8G2M8 1.63e-26 104 29 2 207 1 bepR HTH-type transcriptional repressor BepR Brucella suis biovar 1 (strain 1330)
Q9R9T9 6.23e-23 95 34 5 176 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
Q93PU7 6.13e-18 79 38 2 117 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
O31500 8.68e-10 60 35 1 81 4 yerO Uncharacterized HTH-type transcriptional regulator YerO Bacillus subtilis (strain 168)
Q6GDM3 6.46e-07 51 33 4 111 4 SAR2658 HTH-type transcriptional regulator SAR2658 Staphylococcus aureus (strain MRSA252)
Q99R60 7.34e-07 51 43 0 53 4 SAV2578 HTH-type transcriptional regulator SAV2578 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q79ZX9 7.34e-07 51 43 0 53 4 MW2498 HTH-type transcriptional regulator MW2498 Staphylococcus aureus (strain MW2)
Q6G696 7.34e-07 51 43 0 53 4 SAS2464 HTH-type transcriptional regulator SAS2464 Staphylococcus aureus (strain MSSA476)
Q7A3C7 7.34e-07 51 43 0 53 4 SA2364 HTH-type transcriptional regulator SA2364 Staphylococcus aureus (strain N315)
Q2FV42 8.59e-07 50 43 0 53 4 SAOUHSC_02897 HTH-type transcriptional regulator SAOUHSC_02897 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q5HCX3 8.59e-07 50 43 0 53 4 SACOL2593 HTH-type transcriptional regulator SACOL2593 Staphylococcus aureus (strain COL)
Q2FDS9 8.59e-07 50 43 0 53 4 SAUSA300_2515 HTH-type transcriptional regulator SAUSA300_2515 Staphylococcus aureus (strain USA300)
P95251 1.31e-06 51 36 1 79 1 mce3R Transcriptional repressor Mce3R Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q2YWD0 3.26e-06 49 43 0 53 4 SAB2452 HTH-type transcriptional regulator SAB2452 Staphylococcus aureus (strain bovine RF122 / ET3-1)
O34619 9.37e-06 48 41 1 53 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
P28815 1.68e-05 47 40 2 65 1 tetC Transposon Tn10 TetC protein Escherichia coli
Q5HKQ1 2.22e-05 47 30 0 52 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8GLC6 2.28e-05 47 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis
P42105 2.59e-05 46 39 1 64 1 yxaF Uncharacterized HTH-type transcriptional regulator YxaF Bacillus subtilis (strain 168)
P94548 3.93e-05 46 41 0 53 1 fadR Fatty acid metabolism regulator protein Bacillus subtilis (strain 168)
Q8GAF9 7.2e-05 45 25 7 202 1 hdnoR HTH-type nicotine-responsive transcriptional repressor HdnoR Paenarthrobacter nicotinovorans
A0R4Z6 7.96e-05 45 36 0 61 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q79ZV4 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MW2)
Q6G609 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MSSA476)
Q6GDD9 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MRSA252)
Q7A352 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain N315)
Q7A2K5 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QKF4 8.26e-05 45 30 0 52 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Newman)
Q5HCN2 8.26e-05 45 30 0 52 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain COL)
Q9RQQ0 8.26e-05 45 30 0 52 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q9RMY4 0.000314 43 33 0 57 4 pXO2-48 Uncharacterized HTH-type transcriptional regulator pXO2-48/BXB0055/GBAA_pXO2_0055 Bacillus anthracis
P40950 0.000516 43 39 0 46 4 yuxN Uncharacterized HTH-type transcriptional regulator YuxN Bacillus subtilis (strain 168)
P0A0N5 0.000546 42 27 3 114 1 qacR HTH-type transcriptional regulator QacR Staphylococcus haemolyticus
P0A0N4 0.000546 42 27 3 114 1 qacR HTH-type transcriptional regulator QacR Staphylococcus aureus
P0A0N3 0.000546 42 27 3 114 1 qacR HTH-type transcriptional regulator QacR Staphylococcus aureus (strain Mu50 / ATCC 700699)
O31560 0.000716 42 29 1 65 1 yfiR Uncharacterized HTH-type transcriptional regulator YfiR Bacillus subtilis (strain 168)
P32398 0.000851 42 42 0 49 4 yhgD Uncharacterized HTH-type transcriptional regulator YhgD Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00645
Feature type CDS
Gene acrR
Product multidrug efflux transporter transcriptional repressor AcrR
Location 166366 - 167010 (strand: 1)
Length 645 (nucleotides) / 214 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2125
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF08361 MAATS-type transcriptional repressor, C-terminal region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor - -

Protein Sequence

MARKTKRQAQETRQQIIDAALRLFTVQGVSATSLSDIATEAGVTRGAIYWHFKNKVDLFTEACELTDLKIESLELEYQSKYPDDPLFVLRELLIYILTSIVEDPKHNALLEIYFHKCEFVGEMTPIVEIRRELCAADYSRIEQSLSRCIEKKQLPANLDLRRAAIMLRAMMTGLAENWLFSPESFSIKEESQYLVDSFIDMIKHSVNMRISALS

Flanking regions ( +/- flanking 50bp)

CAAACATACATGAATGTATGTAAATTAACTTCAGTCAAAATCGAGGAATAATGGCACGAAAAACTAAACGCCAAGCACAAGAGACAAGACAGCAGATTATTGATGCTGCACTTAGGCTATTTACTGTGCAAGGTGTTTCTGCCACATCACTTTCAGATATTGCAACCGAGGCCGGAGTAACTCGAGGTGCAATATATTGGCACTTTAAGAATAAAGTGGATTTATTTACTGAAGCGTGTGAACTCACCGACTTAAAAATAGAATCATTAGAATTAGAGTATCAATCAAAATATCCAGATGATCCACTATTTGTATTAAGAGAATTGCTTATTTACATATTGACATCAATTGTCGAAGATCCGAAACATAATGCACTTCTAGAAATATATTTCCATAAGTGCGAATTTGTTGGTGAAATGACACCAATTGTTGAAATCCGCCGAGAATTATGTGCAGCCGATTACTCTAGAATAGAGCAATCTTTATCTCGCTGTATCGAAAAAAAACAACTCCCAGCCAACCTTGATTTAAGAAGAGCTGCGATTATGTTAAGAGCTATGATGACAGGGCTTGCTGAAAATTGGTTATTTTCACCAGAAAGTTTTTCTATTAAAGAGGAAAGTCAATATTTGGTTGATAGTTTTATTGATATGATTAAGCATAGCGTAAATATGAGAATATCGGCGCTATCTTAATTTATTCTTAAACATAAGGAAGAAGTTCATGAGCAAAGTATTAGTGATTG