Orthogroup:group_213


Homologs in group_213

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13810 FBDBKF_13810 Morganella morganii S1 betT Choline-glycine betaine transporter
EHELCC_11480 EHELCC_11480 Morganella morganii S2 betT Choline-glycine betaine transporter
NLDBIP_11825 NLDBIP_11825 Morganella morganii S4 betT Choline-glycine betaine transporter
LHKJJB_11685 LHKJJB_11685 Morganella morganii S3 betT Choline-glycine betaine transporter
HKOGLL_10295 HKOGLL_10295 Morganella morganii S5 betT Choline-glycine betaine transporter
F4V73_RS12675 F4V73_RS12675 Morganella psychrotolerans betT choline BCCT transporter BetT
PMI_RS01210 PMI_RS01210 Proteus mirabilis HI4320 betT choline BCCT transporter BetT
PMI_RS07075 PMI_RS07075 Proteus mirabilis HI4320 - choline transporter
PMI_RS13075 PMI_RS13075 Proteus mirabilis HI4320 caiT L-carnitine/gamma-butyrobetaine antiporter

Distribution of group_213 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_213 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_213

Orthogroup content: 9 members

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This page summarizes the annotation of all members of the orthologous group group_213.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 betT 7
2 - 1
3 caiT 1

Product

# Product Occurence
1 Choline-glycine betaine transporter 5
2 choline BCCT transporter BetT 2
3 choline transporter 1
4 L-carnitine/gamma-butyrobetaine antiporter 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1292 9 M Cell wall/membrane/envelope biogenesis (M) Choline-glycine betaine transporter

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02168 8 choline/glycine/proline betaine transport protein - -
K05245 1 L-carnitine/gamma-butyrobetaine antiporter - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02028 9 BCCT, betaine/carnitine/choline family transporter

Annotations of the 69 SwissProt hits

Annotation Number of occurrences
Betaine/ectoine transporter LcoP 1
Carnitine transporter 1
Ectoine/glycine betaine/proline transporter EctP 1
Ectoine/hydroxyectoine transporter 1
Glycine betaine transporter 1
Glycine betaine transporter 1 1
Glycine betaine transporter 2 1
Glycine betaine transporter BetL 1
Glycine betaine transporter BetP 1
Glycine betaine transporter OpuD 1
Glycine betaine/proline betaine transporter BetS 1
Glycine betaine/proline/choline transporter VP1723 1
Glycine betaine/proline/choline/ectoine transporter VP1456 1
High-affinity choline transport protein 2
L-carnitine/gamma-butyrobetaine antiporter 44
Osmo-dependent choline transporter BetT2 1
Osmo-independent choline transporter BetT1 1
Probable glycine betaine transporter 1
Trimethylamine transporter 1
Uncharacterized transporter HI_1706 1
Uncharacterized transporter MT0942 1
Uncharacterized transporter Mb0941 1
Uncharacterized transporter Rv0917 1
Uncharacterized transporter YeaV 2

Protein length

Min length 514
Max length 680
Mean length (sd) 650.8 (51.5)
Median length 666.0

Protein length distribution