Homologs in group_418

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18770 FBDBKF_18770 38.6 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
FBDBKF_20460 FBDBKF_20460 38.6 Morganella morganii S1 tetC tetracyline resistance-associated transcriptional repressor TetC
EHELCC_16965 EHELCC_16965 38.6 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_18345 NLDBIP_18345 38.6 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_09280 LHKJJB_09280 38.6 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_08830 HKOGLL_08830 38.6 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS13820 F4V73_RS13820 40.7 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_418

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_418

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28815 3.63e-38 133 38 1 196 1 tetC Transposon Tn10 TetC protein Escherichia coli
P39601 1.28e-05 47 33 3 105 4 ywcC Uncharacterized HTH-type transcriptional regulator YwcC Bacillus subtilis (strain 168)
Q9R9T9 2.58e-05 47 36 2 71 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
Q93PU7 5.03e-05 45 35 2 70 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
Q3J6K8 0.000223 44 35 0 56 1 acuR Transcriptional regulator AcuR Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P0ACT1 0.000361 43 35 1 67 3 acrR HTH-type transcriptional regulator AcrR Shigella flexneri
P0ACS9 0.000361 43 35 1 67 1 acrR HTH-type transcriptional regulator AcrR Escherichia coli (strain K12)
P0ACT0 0.000361 43 35 1 67 3 acrR HTH-type transcriptional regulator AcrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9ZN78 0.000455 43 38 0 54 1 arpA A-factor receptor protein Streptomyces griseus
Q9AIU0 0.000551 43 33 0 56 1 ttgR HTH-type transcriptional regulator TtgR Pseudomonas putida (strain DOT-T1E)
Q88N29 0.000556 43 33 0 56 3 ttgR Probable HTH-type transcriptional regulator TtgR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9KJC4 0.000556 43 33 0 56 3 arpR Probable HTH-type transcriptional regulator ArpR Pseudomonas putida
P32398 0.000791 42 29 3 109 4 yhgD Uncharacterized HTH-type transcriptional regulator YhgD Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05690
Feature type CDS
Gene -
Product TetR family transcriptional regulator
Location 1238362 - 1238985 (strand: 1)
Length 624 (nucleotides) / 207 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_418
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MKLKSRQQENSEQTRLALLEAGQYLFVNQCYYDVSIDEISRYARVTKGAFYHHFSNKKALLRECYLLQVKHAVQKLDEVPTYDDKWQELTALFSLCVDHIYQCKNELIPLQEVISVLGWKEWEEIDANILIPRIQHCVDILFAEKQICAYSPAIVVNLIYGFITHIAINLKNEASLPKEACSDFKAIFADFLIGVKQASPQRHQHRV

Flanking regions ( +/- flanking 50bp)

ATACCCATATATTATTACATACTTATGGTATGTTTTATGGGTTTTTTATCATGAAATTAAAATCACGGCAACAAGAGAATTCAGAACAAACACGCTTAGCTTTACTTGAAGCTGGACAATATCTCTTTGTAAATCAATGCTATTATGATGTTTCCATTGATGAAATATCACGTTATGCAAGGGTTACTAAAGGGGCGTTTTATCATCACTTTAGTAATAAAAAAGCCCTTTTGAGAGAGTGTTATTTACTGCAAGTTAAGCATGCTGTTCAAAAATTAGATGAAGTGCCTACTTATGATGATAAATGGCAAGAGCTAACGGCGCTCTTCTCTCTTTGTGTTGACCATATTTATCAGTGTAAAAACGAGTTAATTCCCTTACAAGAAGTTATCTCGGTATTAGGTTGGAAAGAGTGGGAAGAGATTGACGCCAACATTCTTATTCCTCGTATCCAACACTGTGTTGATATACTCTTTGCTGAAAAACAGATCTGTGCTTATTCACCGGCTATTGTGGTGAATTTAATTTATGGTTTTATTACTCATATTGCTATCAATCTAAAAAATGAAGCGTCATTGCCGAAAGAGGCATGTAGTGATTTTAAAGCTATTTTTGCTGATTTTTTAATCGGGGTAAAACAAGCATCACCACAGCGTCATCAACATAGGGTATAAAGAGGTATTAAAATACCTCTAAGCATTGTGCAAAAGATTAACAATCAACA