Homologs in group_1295

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07895 FBDBKF_07895 87.9 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_13725 EHELCC_13725 87.9 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_14170 NLDBIP_14170 87.9 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_08680 LHKJJB_08680 87.9 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_08230 HKOGLL_08230 87.9 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS00740 PMI_RS00740 66.3 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_1295

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1295

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13085
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 233499 - 234149 (strand: -1)
Length 651 (nucleotides) / 216 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1295
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MVCTDDGVPYSGTRRRTFNLLINTALTLFEQGAIPSVSELAADAGVSRATAYRYFPTQSDLISATVNASLGPILTWRSDSPETQTRMEQLLAFAYPQMFKHEGALRAALYVSLEQWAQDRSASAKSLVNDEKKLVRGHRKAILANVVEPLKNQVDNDTLDKVIRAFSLVYGSEVFLVMKDIWKMDDGGVIDITQWMAKAIINQALADNRAHQDEQP

Flanking regions ( +/- flanking 50bp)

GATAGCGACGCAAAAACTTACAAAAAGCTTGTTTAAAGGATAAATCAGTTATGGTCTGTACTGATGATGGTGTGCCTTATTCCGGCACCCGGAGAAGGACATTTAATTTACTTATTAACACGGCTCTGACCCTTTTCGAGCAGGGCGCTATCCCGTCAGTGTCTGAACTGGCAGCAGATGCCGGTGTTTCCCGTGCGACGGCATACCGTTATTTTCCGACACAGAGTGACCTTATTTCTGCCACTGTAAATGCCAGCCTCGGTCCTATTCTGACCTGGCGTTCGGACAGCCCTGAGACACAAACCCGTATGGAACAGTTGCTTGCATTTGCGTATCCGCAAATGTTTAAACATGAAGGCGCATTACGTGCCGCGCTGTATGTGTCGTTAGAGCAGTGGGCGCAGGATCGCTCAGCCTCTGCCAAATCACTGGTTAATGATGAGAAAAAACTGGTCAGAGGGCACCGCAAAGCGATTCTGGCAAATGTGGTGGAGCCGCTGAAAAATCAGGTGGATAACGACACGCTGGACAAAGTTATCCGCGCGTTTTCATTGGTGTATGGCTCAGAAGTCTTCCTGGTGATGAAAGATATCTGGAAGATGGATGATGGCGGAGTCATCGATATTACACAGTGGATGGCAAAAGCAATTATCAACCAGGCACTGGCCGACAACCGGGCGCATCAGGATGAGCAGCCGTAACCTGATCATTCTTTGATAGTCAGGCGCAGGGAATAGACCGGATCAGAGGT