Homologs in group_540

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01255 FBDBKF_01255 86.3 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_00290 EHELCC_00290 86.3 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_03170 NLDBIP_03170 86.3 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_04685 LHKJJB_04685 86.3 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_02360 HKOGLL_02360 86.3 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS06060 PMI_RS06060 58.7 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_540

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_540

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WMB9 5.1e-10 59 36 0 71 1 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMB8 5.1e-10 59 36 0 71 3 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A0R4Z6 5.77e-09 57 33 1 77 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O08335 2.98e-07 52 40 0 61 4 fatR HTH-type transcriptional repressor FatR Bacillus subtilis (strain 168)
Q0S7V2 5.79e-06 48 38 0 57 1 kstR2 HTH-type transcriptional repressor KstR2 Rhodococcus jostii (strain RHA1)
P94548 8.27e-06 47 28 1 114 1 fadR Fatty acid metabolism regulator protein Bacillus subtilis (strain 168)
O07001 1.01e-05 47 33 0 69 1 yvdT Uncharacterized HTH-type transcriptional regulator YvdT Bacillus subtilis (strain 168)
O31560 1.47e-05 47 30 2 84 1 yfiR Uncharacterized HTH-type transcriptional regulator YfiR Bacillus subtilis (strain 168)
Q79ZV4 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MW2)
Q6G609 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MSSA476)
Q6GDD9 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MRSA252)
Q7A352 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain N315)
Q7A2K5 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QKF4 3.41e-05 46 40 0 47 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Newman)
Q5HCN2 3.41e-05 46 40 0 47 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain COL)
Q9RQQ0 3.41e-05 46 40 0 47 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain NCTC 8325 / PS 47)
P43506 0.000108 44 41 0 56 1 bm3R1 HTH-type transcriptional repressor Bm3R1 Priestia megaterium
P28815 0.000116 44 39 0 46 1 tetC Transposon Tn10 TetC protein Escherichia coli
Q8G2M8 0.000177 44 37 1 53 1 bepR HTH-type transcriptional repressor BepR Brucella suis biovar 1 (strain 1330)
P0A0N5 0.000244 43 21 5 174 1 qacR HTH-type transcriptional regulator QacR Staphylococcus haemolyticus
P0A0N4 0.000244 43 21 5 174 1 qacR HTH-type transcriptional regulator QacR Staphylococcus aureus
P0A0N3 0.000244 43 21 5 174 1 qacR HTH-type transcriptional regulator QacR Staphylococcus aureus (strain Mu50 / ATCC 700699)
P96676 0.000342 43 34 3 93 4 ydeS Uncharacterized HTH-type transcriptional regulator YdeS Bacillus subtilis (strain 168)
P67430 0.00045 43 27 2 94 1 nemR HTH-type transcriptional repressor NemR Escherichia coli (strain K12)
P67431 0.00045 43 27 2 94 3 nemR HTH-type transcriptional repressor NemR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9RAJ1 0.000521 42 32 1 65 4 dhaR HTH-type transcriptional repressor DhaR Mycobacterium sp. (strain GP1)
Q66D52 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TNP0 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pestis (strain Pestoides F)
Q1CFR9 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZGV8 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pestis
B2K8U6 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C930 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Antiqua)
A7FKL4 0.000547 42 28 0 92 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q8GLC6 0.000549 42 31 0 58 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis
Q5HKQ1 0.000576 42 31 0 58 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P75952 0.00075 42 28 1 91 1 comR HTH-type transcriptional repressor ComR Escherichia coli (strain K12)
P39897 0.001 42 28 4 116 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07295
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 1522686 - 1523279 (strand: 1)
Length 594 (nucleotides) / 197 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_540
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MTQSAEHKPRFKPADVRINELMDAAEALFLEKGFDATTVSDIVARAGVAKGTYYHYFAAKPDIYEALRQRYMEWFLSQTQQATDACAAGDVNAKLAAWCERSVTAYAEKQKLHDVLFHQGFHQQGNEHENAVLTQLIALIAEAELLGVWQVAHPDITAMIIYHGMHAAVDTLPHSCNYDVNTLGSVLYEQFLRFLRA

Flanking regions ( +/- flanking 50bp)

GTCTGCCGGAAATGGCATAATCTCTGTTTTCCGTTATATAAGGCGCGTTTATGACTCAGTCAGCGGAACACAAACCCCGTTTTAAGCCTGCCGACGTCCGGATCAATGAACTGATGGATGCCGCCGAAGCACTGTTCCTGGAAAAGGGATTTGATGCAACTACTGTCAGCGATATTGTGGCACGCGCCGGTGTTGCCAAAGGCACGTATTATCACTACTTTGCCGCCAAGCCGGATATTTATGAGGCGCTGCGTCAGCGCTATATGGAGTGGTTTTTATCACAAACTCAGCAGGCAACAGATGCCTGTGCTGCCGGTGATGTAAATGCAAAACTGGCTGCCTGGTGTGAACGCTCCGTCACCGCGTATGCAGAAAAACAGAAGCTGCATGATGTTCTGTTTCATCAGGGCTTTCATCAGCAGGGAAATGAGCATGAAAATGCCGTACTGACGCAATTAATTGCGCTGATTGCTGAAGCAGAGCTTCTCGGAGTATGGCAGGTCGCACATCCGGATATCACTGCCATGATTATTTATCATGGTATGCATGCTGCCGTTGATACCCTGCCGCACTCCTGCAATTATGATGTGAATACTTTGGGATCAGTATTATACGAACAGTTTCTGCGTTTTTTACGCGCCTGACGTTAAATATGAAAAAACCCGGCGGCAGCCGGGTCTTCTCACTAACACTC