Homologs in group_3669

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20470 FBDBKF_20470 40.8 Morganella morganii S1 - HTH tetR-type domain-containing protein
PMI_RS07070 PMI_RS07070 21.4 Proteus mirabilis HI4320 betI transcriptional regulator BetI
PMI_RS11865 PMI_RS11865 30.2 Proteus mirabilis HI4320 tetR(J) tetracycline resistance transcriptional repressor TetR(J)

Distribution of the homologs in the orthogroup group_3669

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3669

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04483 8.64e-25 99 32 5 210 1 tetR Tetracycline repressor protein class B from transposon Tn10 Escherichia coli
P21337 2.49e-24 98 32 4 207 1 tetR Tetracycline repressor protein class E Escherichia coli
P51560 3.64e-24 98 30 5 208 2 tetR Tetracycline repressor protein class G Vibrio anguillarum
P03039 1.88e-23 96 36 3 152 4 tetR Tetracycline repressor protein class C Escherichia coli
P51562 7.17e-23 94 33 5 212 2 tetR Tetracycline repressor protein class H Photobacterium damsela subsp. piscicida
P0ACT5 7.17e-23 94 33 5 212 3 tetR Tetracycline repressor protein class D Salmonella ordonez
P0ACT4 7.17e-23 94 33 5 212 1 tetR Tetracycline repressor protein class D Escherichia coli
P03038 1.45e-22 94 35 2 149 1 tetR Tetracycline repressor protein class A from transposon 1721 Escherichia coli
P51561 6.78e-20 86 28 4 212 1 tetR Tetracycline repressor protein class H Pasteurella multocida
Q79ZV4 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MW2)
Q6G609 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MSSA476)
Q6GDD9 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MRSA252)
Q7A352 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain N315)
Q7A2K5 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QKF4 2.97e-06 49 40 0 45 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Newman)
Q5HCN2 2.97e-06 49 40 0 45 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain COL)
Q9RQQ0 2.97e-06 49 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain NCTC 8325 / PS 47)
P67435 2e-05 47 28 1 87 4 BQ2027_MB1388C Uncharacterized HTH-type transcriptional regulator Mb1388c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMD3 2e-05 47 28 1 87 1 Rv1353c HTH-type transcriptional repressor Rv1353c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMD2 2e-05 47 28 1 87 3 MT1396 HTH-type transcriptional repressor MT1396 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8GLC6 3.69e-05 46 37 0 43 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis
Q5HKQ1 3.76e-05 46 37 0 43 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q0S7V2 0.000154 44 39 0 48 1 kstR2 HTH-type transcriptional repressor KstR2 Rhodococcus jostii (strain RHA1)
P75952 0.000265 43 25 5 181 1 comR HTH-type transcriptional repressor ComR Escherichia coli (strain K12)
P22645 0.000396 43 30 1 103 4 None Uncharacterized HTH-type transcriptional regulator in dhlA 5'region Xanthobacter autotrophicus
Q0HZU6 0.001 42 29 3 112 3 slmA Nucleoid occlusion factor SlmA Shewanella sp. (strain MR-7)
Q0HE53 0.001 42 29 3 112 3 slmA Nucleoid occlusion factor SlmA Shewanella sp. (strain MR-4)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15255
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
Location 3384931 - 3385569 (strand: -1)
Length 639 (nucleotides) / 212 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3669
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF02909 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18476 TetR/AcrR family transcriptional regulator, tetracycline repressor protein - -

Protein Sequence

MKSPKIDRLNVLDTALSLLEKEGIEGLTMRKLADALHIKAASLYWHFDNKQTLIEGMADRIVSEVAVDFHYSQDWKADLKRLATELREAFLQHRDGARVFAGTYVISENVLRINNTLITLIMQSGASAELASNMSMTLLYFILGCCIEQQAITLIDSEILMQKRLAFEQIVRDKYPQTWQVREILFADDFAMRFNFGLEQLVTGFEHQLKTP

Flanking regions ( +/- flanking 50bp)

TATGTTAAACTAACGTTGTTAGATAGAAAAGAGGAAAATGAGAATTATTTATGAAAAGCCCTAAAATTGATCGATTAAATGTGTTAGATACGGCGCTTTCTTTGCTGGAAAAAGAAGGGATTGAAGGCTTAACAATGCGAAAACTGGCAGATGCATTACATATAAAAGCCGCCTCTCTCTACTGGCATTTTGATAATAAACAAACGCTTATTGAGGGAATGGCAGATCGTATAGTCAGTGAAGTCGCTGTTGATTTTCACTATAGCCAAGATTGGAAAGCTGATCTAAAACGTCTAGCAACAGAACTAAGAGAAGCTTTTTTACAACATCGTGATGGTGCTAGAGTTTTTGCCGGAACCTATGTGATTTCTGAGAATGTGTTACGTATAAACAATACGCTTATTACTTTAATTATGCAGTCTGGTGCATCTGCTGAGTTAGCAAGCAATATGTCGATGACCTTACTCTATTTTATTTTAGGGTGTTGCATTGAACAGCAAGCTATCACGCTTATTGATAGTGAAATTTTAATGCAAAAACGACTCGCTTTTGAACAAATTGTACGTGATAAATACCCTCAAACTTGGCAAGTAAGAGAAATTCTTTTTGCTGATGATTTTGCTATGCGTTTTAATTTTGGCTTAGAGCAACTAGTCACAGGGTTTGAACACCAACTGAAGACACCATGAGGTTGGTTTAAAAAGGCCGTTTGTAACTAAACAAACGGCACTTTATTTAT