Homologs in group_2497

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01765 FBDBKF_01765 100.0 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_02235 EHELCC_02235 100.0 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_00810 LHKJJB_00810 100.0 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_00850 HKOGLL_00850 100.0 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS04095 F4V73_RS04095 83.4 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2497

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2497

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75952 1.03e-06 50 44 0 56 1 comR HTH-type transcriptional repressor ComR Escherichia coli (strain K12)
O34619 7.38e-06 48 43 1 55 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
Q8FTA6 1.59e-05 47 46 0 50 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NQ97 2.34e-05 47 46 0 50 1 acnR HTH-type transcriptional repressor AcnR Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8X4Z7 3.21e-05 46 40 0 57 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O157:H7
P0ACU4 3.27e-05 46 40 0 57 3 rutR HTH-type transcriptional regulator RutR Shigella flexneri
P0ACU2 3.27e-05 46 40 0 57 1 rutR HTH-type transcriptional regulator RutR Escherichia coli (strain K12)
P0ACU3 3.27e-05 46 40 0 57 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q6NH62 5.38e-05 45 45 0 51 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
O31560 0.000264 43 34 0 64 1 yfiR Uncharacterized HTH-type transcriptional regulator YfiR Bacillus subtilis (strain 168)
P32398 0.000389 43 26 2 104 4 yhgD Uncharacterized HTH-type transcriptional regulator YhgD Bacillus subtilis (strain 168)
Q88FX7 0.000706 42 25 0 97 2 nicS HTH-type transcriptional repressor NicS Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q7WY76 0.000814 42 37 0 54 4 yezE Uncharacterized HTH-type transcriptional regulator YezE Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01225
Feature type CDS
Gene acrR
Product DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
Location 249166 - 249804 (strand: 1)
Length 639 (nucleotides) / 212 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2497
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF14246 AefR-like transcriptional repressor, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18130 TetR/AcrR family transcriptional regulator, transcriptional repressor NalC beta-Lactam resistance -

Protein Sequence

MSSTPSPLTPKGQRRRHAILTAAADVFILHGYEGTTLDMIIEQSGGSRSTLYTSFGGKEALFLAVIDHLISGIFEDNEEEKPETAPDAETLLYTSGRRYLYSIVHPQSLGLYQLILAESQRFPQISEQFYRAGPLRAAQQLAAGLKALPGITATEETLLAVAARFLEMLKADLYLPVFSHRHNKPTAEFIEKQLPLSVEITACYLRHTLTPQ

Flanking regions ( +/- flanking 50bp)

CGGCGTGGTTAAATCAGGACATATCACTGTCACAGGAGCCTGTATCTGTTATGTCATCCACCCCGTCACCATTAACCCCGAAAGGGCAGCGCCGCCGTCATGCCATTCTCACCGCCGCTGCGGATGTTTTTATCCTCCATGGTTACGAAGGCACGACTCTGGATATGATAATTGAACAATCCGGCGGGTCACGTTCCACTCTGTATACCTCTTTTGGCGGAAAAGAAGCATTGTTTCTGGCCGTCATAGACCATCTTATCAGCGGAATTTTTGAGGATAATGAAGAGGAAAAACCGGAAACAGCACCCGATGCAGAGACACTGTTATACACCAGCGGCAGACGCTACCTGTACAGTATTGTTCACCCGCAGTCACTCGGCTTATATCAGTTGATTCTGGCGGAATCACAACGCTTCCCGCAAATCAGTGAACAATTTTACCGCGCCGGTCCGCTGCGGGCCGCACAACAACTGGCGGCCGGGCTGAAAGCACTGCCCGGCATCACCGCGACTGAGGAAACATTGCTGGCCGTTGCCGCCCGTTTTCTGGAAATGCTGAAAGCCGACCTGTATCTGCCGGTTTTCAGTCATCGTCATAACAAGCCAACGGCGGAATTTATTGAAAAACAGCTGCCGTTATCTGTGGAGATAACGGCCTGTTACCTCCGCCACACATTAACCCCCCAATGAGCAGCGGTTATCATTAGCATCTGCCTTCAGGCGGTCACTTCTGCCGCCTT