Homologs in group_401

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16080 FBDBKF_16080 25.3 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_16115 EHELCC_16115 25.3 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_17225 NLDBIP_17225 25.3 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_17145 LHKJJB_17145 25.3 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_16695 HKOGLL_16695 25.3 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS10995 PMI_RS10995 26.7 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator
PMI_RS14640 PMI_RS14640 25.6 Proteus mirabilis HI4320 - TetR family transcriptional regulator

Distribution of the homologs in the orthogroup group_401

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_401

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39897 1.05e-07 53 26 6 181 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
A0R4Z6 1.25e-05 47 23 4 161 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q2YWD0 4.26e-05 45 34 0 63 4 SAB2452 HTH-type transcriptional regulator SAB2452 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q99R60 5.71e-05 45 33 0 65 4 SAV2578 HTH-type transcriptional regulator SAV2578 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q79ZX9 5.71e-05 45 33 0 65 4 MW2498 HTH-type transcriptional regulator MW2498 Staphylococcus aureus (strain MW2)
Q6G696 5.71e-05 45 33 0 65 4 SAS2464 HTH-type transcriptional regulator SAS2464 Staphylococcus aureus (strain MSSA476)
Q7A3C7 5.71e-05 45 33 0 65 4 SA2364 HTH-type transcriptional regulator SA2364 Staphylococcus aureus (strain N315)
Q2FV42 5.93e-05 45 33 0 65 4 SAOUHSC_02897 HTH-type transcriptional regulator SAOUHSC_02897 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q5HCX3 5.93e-05 45 33 0 65 4 SACOL2593 HTH-type transcriptional regulator SACOL2593 Staphylococcus aureus (strain COL)
Q2FDS9 5.93e-05 45 33 0 65 4 SAUSA300_2515 HTH-type transcriptional regulator SAUSA300_2515 Staphylococcus aureus (strain USA300)
Q6GDM3 6.11e-05 45 33 0 65 4 SAR2658 HTH-type transcriptional regulator SAR2658 Staphylococcus aureus (strain MRSA252)
Q93PU7 7.68e-05 44 33 0 51 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
P28815 7.7e-05 45 27 0 73 1 tetC Transposon Tn10 TetC protein Escherichia coli
P0ACT9 0.0001 45 36 2 80 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 0.0001 45 36 2 80 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 0.0001 45 36 2 80 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 0.0001 45 36 2 80 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
Q9R9T9 0.000171 44 33 0 51 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
Q57EH9 0.000233 43 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella abortus biovar 1 (strain 9-941)
Q2YMS6 0.000233 43 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella abortus (strain 2308)
Q66D52 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TNP0 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pestis (strain Pestoides F)
Q1CFR9 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZGV8 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pestis
B2K8U6 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C930 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Antiqua)
A7FKL4 0.000332 43 29 7 179 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
O33453 0.00045 43 40 0 55 2 cymR HTH-type transcriptional regulator CymR Pseudomonas putida
B0CKN5 0.000596 42 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella suis (strain ATCC 23445 / NCTC 10510)
A9M9H9 0.000596 42 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)
O34619 0.000614 42 27 5 125 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
Q9AIU0 0.000779 42 34 0 61 1 ttgR HTH-type transcriptional regulator TtgR Pseudomonas putida (strain DOT-T1E)
A6X2G6 0.000794 42 30 4 119 3 betI HTH-type transcriptional regulator BetI Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)
Q88N29 0.000841 42 34 0 61 3 ttgR Probable HTH-type transcriptional regulator TtgR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9KJC4 0.000841 42 34 0 61 3 arpR Probable HTH-type transcriptional regulator ArpR Pseudomonas putida
B5FFF4 0.00087 42 34 2 73 3 slmA Nucleoid occlusion factor SlmA Aliivibrio fischeri (strain MJ11)
Q5E8M7 0.00087 42 34 2 73 3 slmA Nucleoid occlusion factor SlmA Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q8G1Z7 0.00089 42 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella suis biovar 1 (strain 1330)
Q8YFY3 0.001 42 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
C0RHQ4 0.001 42 31 4 118 3 betI HTH-type transcriptional regulator BetI Brucella melitensis biotype 2 (strain ATCC 23457)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13430
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 2974801 - 2975394 (strand: -1)
Length 594 (nucleotides) / 197 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_401
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF17937 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3226 Transcription (K) K DNA-binding transcriptional regulator YbjK

Protein Sequence

MNTTAHHRKKDPIRVQEQLLEAASIIVANEGIASLSLNAVAKEAGVSKGGLLHHFPGKIELIQAVFKRLLGIMDKRIALIMANDPIEAGRFSRAYLTYISDLKQSDESRQLAILSLAMPNEPIMRQCWRDWMLGHLAKGDKLDNSYLGTLIRYAADGLWLSELTEGPTISQQERSALVERLLKMTFEYMADTANQSC

Flanking regions ( +/- flanking 50bp)

TTGATTTTGATCAATAAGGAACATACCGACTGGTCGGTATTATCCTACGCATGAATACAACCGCACATCACCGAAAAAAAGATCCTATCCGCGTCCAAGAGCAGTTATTAGAAGCGGCAAGTATTATTGTGGCGAATGAAGGAATTGCTTCTTTATCTTTAAATGCCGTAGCCAAAGAAGCGGGTGTCAGTAAAGGCGGATTATTGCACCATTTTCCTGGGAAGATAGAACTGATACAGGCGGTATTCAAACGCTTACTCGGTATTATGGATAAACGAATTGCGTTAATTATGGCCAACGATCCGATAGAAGCAGGGCGCTTTTCTCGCGCTTATTTAACCTATATTTCTGATCTCAAACAGTCAGATGAAAGCCGCCAATTGGCAATACTTTCTTTAGCTATGCCTAACGAGCCAATAATGCGTCAATGTTGGCGTGATTGGATGTTAGGCCATTTAGCCAAAGGCGATAAACTTGATAATAGCTACTTAGGTACGTTAATTCGTTATGCTGCCGATGGCCTTTGGTTATCAGAACTCACAGAAGGCCCTACGATTTCACAACAAGAGCGTAGTGCATTAGTTGAAAGATTATTAAAAATGACATTTGAATATATGGCCGACACAGCAAATCAGTCATGTTAATTAGGATGAATGAGGGCACAATGAAATACAGAATAAATGCCTCAATTTAT