Homologs in group_3669

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS07070 PMI_RS07070 24.3 Proteus mirabilis HI4320 betI transcriptional regulator BetI
PMI_RS11865 PMI_RS11865 76.2 Proteus mirabilis HI4320 tetR(J) tetracycline resistance transcriptional repressor TetR(J)
PMI_RS15255 PMI_RS15255 40.8 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator C-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_3669

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3669

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04483 9.06e-74 220 100 0 105 1 tetR Tetracycline repressor protein class B from transposon Tn10 Escherichia coli
P51562 6.33e-55 172 77 0 105 2 tetR Tetracycline repressor protein class H Photobacterium damsela subsp. piscicida
P0ACT5 6.33e-55 172 77 0 105 3 tetR Tetracycline repressor protein class D Salmonella ordonez
P0ACT4 6.33e-55 172 77 0 105 1 tetR Tetracycline repressor protein class D Escherichia coli
P51561 2.12e-53 168 74 0 105 1 tetR Tetracycline repressor protein class H Pasteurella multocida
P03039 9.18e-44 144 62 0 105 4 tetR Tetracycline repressor protein class C Escherichia coli
P03038 1.77e-43 143 61 0 105 1 tetR Tetracycline repressor protein class A from transposon 1721 Escherichia coli
P51560 1.66e-41 138 62 0 105 2 tetR Tetracycline repressor protein class G Vibrio anguillarum
P21337 1.94e-39 133 60 0 105 1 tetR Tetracycline repressor protein class E Escherichia coli
P67435 2.22e-08 53 30 0 84 4 BQ2027_MB1388C Uncharacterized HTH-type transcriptional regulator Mb1388c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMD3 2.22e-08 53 30 0 84 1 Rv1353c HTH-type transcriptional repressor Rv1353c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMD2 2.22e-08 53 30 0 84 3 MT1396 HTH-type transcriptional repressor MT1396 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P39897 0.000152 42 35 1 77 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
O34643 0.000153 42 27 0 77 4 yvkB Uncharacterized HTH-type transcriptional regulator YvkB Bacillus subtilis (strain 168)
O34892 0.000272 41 24 2 104 4 yobS Uncharacterized HTH-type transcriptional regulator YobS Bacillus subtilis (strain 168)
P0ACT9 0.000546 40 25 1 75 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 0.000546 40 25 1 75 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 0.000546 40 25 1 75 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 0.000546 40 25 1 75 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
Q79ZV4 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MW2)
Q6G609 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MSSA476)
Q6GDD9 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MRSA252)
Q7A352 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain N315)
Q7A2K5 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QKF4 0.000728 40 29 0 48 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Newman)
Q5HCN2 0.000728 40 29 0 48 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain COL)
Q9RQQ0 0.000728 40 29 0 48 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain NCTC 8325 / PS 47)
O53789 0.00074 40 33 0 60 1 Rv0681 Uncharacterized HTH-type transcriptional regulator Rv0681 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_20470
Feature type CDS
Gene -
Product HTH tetR-type domain-containing protein
Location 2618 - 2935 (strand: 1)
Length 318 (nucleotides) / 105 (amino acids)

Contig

Accession contig_57
Length 3055 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3669
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF02909 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18476 TetR/AcrR family transcriptional regulator, tetracycline repressor protein - -

Protein Sequence

MSRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAKSFRCALLSHRDGAKVHLGTRP

Flanking regions ( +/- flanking 50bp)

TAAAATAACTCTATCAATGATAGAGTGTCAACAAAAATTAGGAATTAATGATGTCTAGATTAGATAAAAGTAAAGTGATTAACAGCGCATTAGAGCTGCTTAATGAGGTCGGAATCGAAGGTTTAACAACCCGTAAACTCGCCCAGAAGCTAGGTGTAGAGCAGCCTACATTGTATTGGCATGTAAAAAATAAGCGGGCTTTGCTCGACGCCTTAGCCATTGAGATGTTAGATAGGCACCATACTCACTTTTGCCCTTTAGAAGGGGAAAGCTGGCAAGATTTTTTACGTAATAACGCTAAAAGTTTTAGATGTGCTTTACTAAGTCATCGCGATGGAGCAAAAGTACATTTAGGTACACGGCCCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACAC