Homologs in group_1478

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09540 FBDBKF_09540 86.0 Morganella morganii S1 cecR transcriptional regulator CecR
EHELCC_04340 EHELCC_04340 86.0 Morganella morganii S2 cecR transcriptional regulator CecR
NLDBIP_04340 NLDBIP_04340 86.0 Morganella morganii S4 cecR transcriptional regulator CecR
LHKJJB_14290 LHKJJB_14290 86.0 Morganella morganii S3 cecR transcriptional regulator CecR
HKOGLL_12245 HKOGLL_12245 86.0 Morganella morganii S5 cecR transcriptional regulator CecR
PMI_RS03050 PMI_RS03050 59.8 Proteus mirabilis HI4320 cecR transcriptional regulator CecR

Distribution of the homologs in the orthogroup group_1478

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1478

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACU1 2.64e-57 184 44 2 224 3 cecR HTH-type transcriptional dual regulator CecR Shigella flexneri
P0ACU0 2.64e-57 184 44 2 224 1 cecR HTH-type transcriptional dual regulator CecR Escherichia coli (strain K12)
Q8X4Z7 8.87e-06 48 29 3 111 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O157:H7
P0ACU4 9.48e-06 48 29 3 111 3 rutR HTH-type transcriptional regulator RutR Shigella flexneri
P0ACU2 9.48e-06 48 29 3 111 1 rutR HTH-type transcriptional regulator RutR Escherichia coli (strain K12)
P0ACU3 9.48e-06 48 29 3 111 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O34970 9.94e-05 45 26 3 116 1 yttP Probable HTH-type transcriptional regulator YttP Bacillus subtilis (strain 168)
Q8FTA6 0.00023 44 34 1 66 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NQ97 0.000562 43 33 1 66 1 acnR HTH-type transcriptional repressor AcnR Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00825
Feature type CDS
Gene cecR
Product transcriptional regulator CecR
Location 171096 - 171782 (strand: -1)
Length 687 (nucleotides) / 228 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1478
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF09209 HTH-type transcriptional dual regulator CecR, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3226 Transcription (K) K DNA-binding transcriptional regulator YbjK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23777 TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity - -

Protein Sequence

MSVNTTNTPRGEHAKQALLEAAIEIFGLNGPNSATTRQIAQRADQNIAAIAYYFGSKDGLYLAVAQYIADIIRDEFSPVIEEIDIFLSQDHNEPDETRCLQLIELSFLAYNDLVLKKNNINISRIMSREQLIPTKAYTIIHENALALIFSRQARLVALYTGLPDGHINTLIHTHAIMGEILSFRLARETLLRQAGWDNIGEKEYEMINAVLSEHIRLILNGLKDHYLA

Flanking regions ( +/- flanking 50bp)

CACATGATTGATCACTCGTTTATGCCGACACACCCATAAGGATATACGCTATGTCAGTCAACACGACTAATACGCCTCGCGGCGAACACGCCAAACAGGCTTTACTGGAAGCCGCTATTGAGATTTTCGGACTAAACGGCCCAAATAGTGCCACTACTCGCCAGATTGCACAACGTGCTGATCAAAATATCGCGGCTATTGCTTATTATTTCGGCTCTAAAGATGGCTTATATCTGGCAGTAGCGCAATATATTGCAGACATTATCCGTGATGAATTCAGTCCTGTCATTGAAGAAATAGATATATTTCTGTCACAGGACCACAATGAGCCGGATGAAACGCGCTGCCTGCAACTGATTGAACTGAGTTTTCTTGCGTATAACGACCTGGTACTGAAAAAAAACAACATCAATATCAGCCGGATAATGTCCCGCGAACAGTTGATCCCGACAAAGGCGTATACGATTATTCATGAAAACGCCCTCGCCCTTATTTTTTCACGTCAGGCCAGATTGGTGGCATTATATACCGGTTTGCCGGACGGGCATATAAATACTCTTATCCATACCCATGCCATTATGGGTGAGATTTTATCTTTCCGGCTGGCGCGGGAGACTCTTCTGCGTCAGGCGGGCTGGGATAATATCGGTGAAAAAGAGTATGAGATGATAAATGCGGTACTCAGTGAACATATCCGGCTGATATTAAACGGGTTGAAGGATCATTACCTGGCTTGACGTATCACACAGACCAATAACGGACGGGAAATAAATTCATGACGCCAATG