Homologs in group_540

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01255 FBDBKF_01255 59.7 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_00290 EHELCC_00290 59.7 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_03170 NLDBIP_03170 59.7 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_04685 LHKJJB_04685 59.7 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_02360 HKOGLL_02360 59.7 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS07295 F4V73_RS07295 58.7 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_540

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_540

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0R4Z6 1.66e-09 58 33 2 80 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q0S7V2 1.99e-09 58 38 1 86 1 kstR2 HTH-type transcriptional repressor KstR2 Rhodococcus jostii (strain RHA1)
P9WMB9 9.59e-09 56 41 0 58 1 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMB8 9.59e-09 56 41 0 58 3 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O07001 1.33e-07 53 35 0 64 1 yvdT Uncharacterized HTH-type transcriptional regulator YvdT Bacillus subtilis (strain 168)
P94548 2.66e-07 52 41 0 62 1 fadR Fatty acid metabolism regulator protein Bacillus subtilis (strain 168)
O08335 7.22e-07 50 32 0 70 4 fatR HTH-type transcriptional repressor FatR Bacillus subtilis (strain 168)
Q66D52 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TNP0 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pestis (strain Pestoides F)
Q1CFR9 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZGV8 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pestis
B2K8U6 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C930 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pestis bv. Antiqua (strain Antiqua)
A7FKL4 8.47e-07 50 29 2 95 3 betI HTH-type transcriptional regulator BetI Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P43506 3.83e-06 48 33 0 65 1 bm3R1 HTH-type transcriptional repressor Bm3R1 Priestia megaterium
P67430 8.71e-06 48 27 1 94 1 nemR HTH-type transcriptional repressor NemR Escherichia coli (strain K12)
P67431 8.71e-06 48 27 1 94 3 nemR HTH-type transcriptional repressor NemR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P28815 9.42e-06 47 41 0 48 1 tetC Transposon Tn10 TetC protein Escherichia coli
O31560 1.17e-05 47 21 2 161 1 yfiR Uncharacterized HTH-type transcriptional regulator YfiR Bacillus subtilis (strain 168)
Q3J6K8 1.19e-05 47 35 1 77 1 acuR Transcriptional regulator AcuR Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P95251 2.26e-05 47 41 0 58 1 mce3R Transcriptional repressor Mce3R Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q8G2M8 3.67e-05 46 36 2 66 1 bepR HTH-type transcriptional repressor BepR Brucella suis biovar 1 (strain 1330)
P75952 6.58e-05 45 30 0 75 1 comR HTH-type transcriptional repressor ComR Escherichia coli (strain K12)
P40950 8.61e-05 45 34 1 58 4 yuxN Uncharacterized HTH-type transcriptional regulator YuxN Bacillus subtilis (strain 168)
P39897 0.00018 44 41 0 55 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
Q79ZV4 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MW2)
Q6G609 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MSSA476)
Q6GDD9 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain MRSA252)
Q7A352 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain N315)
Q7A2K5 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QKF4 0.000236 43 40 0 45 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain Newman)
Q5HCN2 0.000236 43 40 0 45 1 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain COL)
Q9RQQ0 0.000236 43 40 0 45 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus aureus (strain NCTC 8325 / PS 47)
O31500 0.000417 43 28 2 89 4 yerO Uncharacterized HTH-type transcriptional regulator YerO Bacillus subtilis (strain 168)
Q0B713 0.000461 43 25 5 136 3 betI HTH-type transcriptional regulator BetI Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
B1Z032 0.000461 43 25 5 136 3 betI HTH-type transcriptional regulator BetI Burkholderia ambifaria (strain MC40-6)
P0ACT9 0.000648 42 32 1 56 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 0.000648 42 32 1 56 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 0.000648 42 32 1 56 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 0.000648 42 32 1 56 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
Q8GLC6 0.001 42 32 0 59 3 icaR Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR Staphylococcus epidermidis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06060
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 1328397 - 1328993 (strand: 1)
Length 597 (nucleotides) / 198 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_540
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MSLEEKNIDKPRTKPAEVRLEELMNAAETLFLEKGFDATTVSDIVKQAGVAKGTYYHYFTAKTDILDALRTRYMDWYIDKVEQAMASCQIQDFRAKLKQWCETSVIAYVEKQELHDMLFHQVFHQSGNIHENRALQQLQKILMGGTENKTWQVLQPELTCTLIYHGMHAAVDNLEHSTEYTSQTLGALLYRQFTQLLS

Flanking regions ( +/- flanking 50bp)

TATTCTCAATATGGAGTACCCTTTAACAGCCACTTAGAGGGAGATGAGCAATGTCATTAGAAGAAAAAAATATCGATAAACCAAGAACAAAGCCAGCCGAAGTTCGTTTAGAAGAGTTAATGAACGCCGCAGAAACACTATTTCTTGAAAAAGGATTTGATGCCACAACCGTCAGCGATATTGTAAAACAAGCGGGGGTCGCTAAAGGAACGTATTATCACTATTTTACGGCAAAAACAGATATTCTCGACGCACTGCGAACTCGATATATGGATTGGTATATTGATAAAGTTGAGCAAGCAATGGCAAGCTGCCAAATTCAAGATTTTCGCGCTAAATTAAAACAGTGGTGTGAAACTAGCGTTATTGCTTATGTTGAAAAACAAGAATTACACGATATGCTTTTTCATCAAGTCTTTCATCAAAGCGGTAATATTCATGAAAATAGAGCGCTACAGCAGTTACAAAAGATATTAATGGGGGGGACAGAGAATAAAACGTGGCAAGTCCTACAGCCTGAATTAACCTGCACGCTTATTTATCATGGTATGCATGCTGCCGTTGATAATTTAGAACACAGTACGGAATACACATCACAAACATTAGGTGCGCTATTATATCGACAATTTACACAATTATTAAGTTAACCAGACTATTAAATAATGAATATTCGGGTTGTTGATATAAAATAAGCGTG