Homologs in group_401

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16080 FBDBKF_16080 28.5 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_16115 EHELCC_16115 28.5 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_17225 NLDBIP_17225 28.5 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_17145 LHKJJB_17145 28.5 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_16695 HKOGLL_16695 28.5 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS10995 PMI_RS10995 25.0 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator
PMI_RS13430 PMI_RS13430 25.6 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_401

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_401

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q93PU7 2.79e-05 45 24 0 93 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
Q9R9T9 4.41e-05 45 24 0 93 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
A7MSP5 5.16e-05 45 26 1 89 3 slmA Nucleoid occlusion factor SlmA Vibrio campbellii (strain ATCC BAA-1116)
Q87T90 0.000179 43 25 1 89 3 slmA Nucleoid occlusion factor SlmA Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9KVD2 0.000209 43 27 1 85 1 slmA Nucleoid occlusion factor SlmA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q6LVN6 0.000246 43 27 1 85 3 slmA Nucleoid occlusion factor SlmA Photobacterium profundum (strain SS9)
B4SHW1 0.00064 42 38 0 52 3 betI HTH-type transcriptional regulator BetI Stenotrophomonas maltophilia (strain R551-3)
P29280 0.001 42 27 2 84 3 slmA Nucleoid occlusion factor SlmA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UI96 0.001 42 27 2 84 3 slmA Nucleoid occlusion factor SlmA Haemophilus influenzae (strain PittGG)
A5UDB3 0.001 42 27 2 84 3 slmA Nucleoid occlusion factor SlmA Haemophilus influenzae (strain PittEE)
Q4QLV2 0.001 42 27 2 84 3 slmA Nucleoid occlusion factor SlmA Haemophilus influenzae (strain 86-028NP)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14640
Feature type CDS
Gene -
Product TetR family transcriptional regulator
Location 3243886 - 3244437 (strand: -1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_401
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF17937 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MGRQRTIDREKLLEAIFDIVMEQGAAALTIDTVAKKMGISKGGVQYCFNSKEAMIDAMFEHWEGGYEARFNQVVANDNSANNRVRAHIHATHDHDKLSFAKGASLMAALLQTPEYLQSTKAWYQQRLAGVDTTTVEGKRARLAFLATEGAFLLRYFGLMDIDDNEWEEIFSDIDSELVTVTTK

Flanking regions ( +/- flanking 50bp)

GAATAATAATTTTAAATCCATACGGTCGTATTGAAAAGAGGTTTTTTTAAATGGGACGCCAAAGAACGATTGATAGAGAAAAGTTACTTGAGGCTATTTTTGACATCGTGATGGAGCAAGGGGCTGCCGCTCTGACTATCGATACGGTGGCCAAAAAAATGGGGATTTCTAAAGGTGGTGTCCAATATTGCTTTAATAGTAAAGAAGCGATGATTGATGCCATGTTTGAACATTGGGAAGGAGGATATGAAGCGCGATTTAATCAGGTGGTTGCCAATGATAACTCAGCCAATAATCGCGTTAGAGCACATATTCATGCAACTCATGATCACGATAAGCTCTCTTTTGCCAAAGGAGCCAGCTTAATGGCTGCGTTACTGCAAACGCCAGAATATTTGCAAAGTACTAAAGCGTGGTATCAGCAAAGATTAGCGGGTGTCGATACCACAACAGTAGAGGGGAAACGGGCGAGACTGGCTTTTTTAGCCACCGAGGGGGCTTTCTTGCTACGGTATTTTGGTTTAATGGATATTGATGATAATGAGTGGGAAGAGATTTTTAGCGATATTGATTCTGAACTGGTTACAGTGACTACGAAGTAATTAAACAGCATATTGTTTAAAAGTAACAATATGCTGTTTGGCTTTCGGTG