Orthogroup:group_3006


Homologs in group_3006

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17655 FBDBKF_17655 Morganella morganii S1 potC ABC-type spermidine/putrescine transport system, permease component II
EHELCC_18140 EHELCC_18140 Morganella morganii S2 potC ABC-type spermidine/putrescine transport system, permease component II
NLDBIP_18010 NLDBIP_18010 Morganella morganii S4 potC ABC-type spermidine/putrescine transport system, permease component II
LHKJJB_18205 LHKJJB_18205 Morganella morganii S3 potC ABC-type spermidine/putrescine transport system, permease component II
HKOGLL_17995 HKOGLL_17995 Morganella morganii S5 potC ABC-type spermidine/putrescine transport system, permease component II
F4V73_RS15035 F4V73_RS15035 Morganella psychrotolerans - ABC transporter permease

Distribution of group_3006 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3006 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3006

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3006.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 potC 5
2 - 1

Product

# Product Occurence
1 ABC-type spermidine/putrescine transport system, permease component II 5
2 ABC transporter permease 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1177 6 E Amino acid transport and metabolism (E) ABC-type spermidine/putrescine transport system, permease component II

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00528 6 Binding-protein-dependent transport system inner membrane component

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
Maltodextrin transport system permease protein MalC 2
Molybdenum transport system permease protein ModB 4
Probable ABC transporter permease protein y4fN 1
Probable sulfate transport system permease protein cysT 3
Probable transport system permease protein NifC 1
Putative 2-aminoethylphosphonate transport system permease protein PhnV 4
Putative ABC transporter permease protein ORF1 (Fragment) 1
Putrescine transport system permease protein PotH 1
Spermidine/putrescine transport system permease protein PotB 5
Spermidine/putrescine transport system permease protein PotC 5
Sulfate permease 2, chloroplastic 1
Sulfate transport system permease protein CysT 1
Sulfate transport system permease protein CysW 4
Trehalose/maltose transport system permease protein MalF 1

Protein length

Unique protein length 266

Protein length distribution