COG3188
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3188, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 84 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Outer membrane usher protein FimD/PapC |
---|---|
Function(s) descr. | Cell motility (N) Extracellular structures (W) |
Occurence in the database
COG3188 is associated with 84 different proteins (see tab "Protein list" and "Profile") |
The 84 proteins are classified into 7 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_4 | FBDBKF_08985 | 12146 | 14761 | -1 | Outer membrane usher protein | Morganella morganii S1 | |
1 | group_4 | FBDBKF_09035 | 20609 | 23266 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
2 | group_124 | FBDBKF_09115 | 46840 | 49332 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
3 | group_2836 | FBDBKF_10510 | 58547 | 61057 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
4 | group_124 | FBDBKF_10790 | 125208 | 127718 | -1 | Heat shock protein E | Morganella morganii S1 | |
5 | group_3446 | FBDBKF_14595 | 14148 | 16550 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
6 | group_3024 | FBDBKF_17975 | 34592 | 34810 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
7 | group_4 | FBDBKF_18155 | 30694 | 33192 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
8 | group_6 | FBDBKF_20025 | 2996 | 5629 | 1 | fimbrial biogenesis usher protein | Morganella morganii S1 | |
9 | group_6 | FBDBKF_20055 | 9654 | 12242 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S1 |
10 | group_6 | EHELCC_03475 | 2578 | 5166 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
11 | group_6 | EHELCC_03505 | 9191 | 11824 | -1 | fimbrial biogenesis usher protein | Morganella morganii S2 | |
12 | group_3024 | EHELCC_06360 | 1566 | 1784 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
13 | group_124 | EHELCC_10295 | 96772 | 99264 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
14 | group_4 | EHELCC_10375 | 122838 | 125495 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
15 | group_4 | EHELCC_10425 | 131343 | 133958 | 1 | Outer membrane usher protein | Morganella morganii S2 | |
16 | group_2836 | EHELCC_14845 | 58537 | 61047 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
17 | group_124 | EHELCC_15125 | 125198 | 127708 | -1 | Heat shock protein E | Morganella morganii S2 | |
18 | group_3446 | EHELCC_15400 | 44224 | 46626 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
19 | group_4 | EHELCC_16855 | 30694 | 33192 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S2 |
20 | group_6 | NLDBIP_03475 | 2374 | 4962 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
21 | group_6 | NLDBIP_03505 | 8987 | 11620 | -1 | fimbrial biogenesis usher protein | Morganella morganii S4 | |
22 | group_3024 | NLDBIP_06680 | 1439 | 1657 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
23 | group_124 | NLDBIP_10640 | 75043 | 77535 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
24 | group_4 | NLDBIP_10720 | 101109 | 103766 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
25 | group_4 | NLDBIP_10770 | 109614 | 112229 | 1 | Outer membrane usher protein | Morganella morganii S4 | |
26 | group_2836 | NLDBIP_14675 | 58537 | 61047 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
27 | group_124 | NLDBIP_14955 | 125198 | 127708 | -1 | Heat shock protein E | Morganella morganii S4 | |
28 | group_3446 | NLDBIP_15930 | 44224 | 46626 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
29 | group_4 | NLDBIP_17595 | 22574 | 25072 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S4 |
30 | group_6 | LHKJJB_09305 | 2488 | 5076 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
31 | group_6 | LHKJJB_09335 | 9101 | 11734 | -1 | fimbrial biogenesis usher protein | Morganella morganii S3 | |
32 | group_4 | LHKJJB_10585 | 79299 | 81914 | -1 | Outer membrane usher protein | Morganella morganii S3 | |
33 | group_4 | LHKJJB_10635 | 87762 | 90419 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
34 | group_124 | LHKJJB_10715 | 113993 | 116485 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
35 | group_124 | LHKJJB_14390 | 14018 | 16528 | 1 | Heat shock protein E | Morganella morganii S3 | |
36 | group_2836 | LHKJJB_14670 | 80679 | 83189 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
37 | group_3446 | LHKJJB_15910 | 70060 | 72462 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
38 | group_4 | LHKJJB_17515 | 22574 | 25072 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
39 | group_3024 | LHKJJB_19280 | 1350 | 1568 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S3 |
40 | group_3024 | HKOGLL_04710 | 267984 | 268202 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
41 | group_6 | HKOGLL_09640 | 179318 | 181951 | 1 | fimbrial biogenesis usher protein | Morganella morganii S5 | |
42 | group_6 | HKOGLL_09670 | 185976 | 188564 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
43 | group_124 | HKOGLL_13010 | 14018 | 16528 | 1 | Heat shock protein E | Morganella morganii S5 | |
44 | group_2836 | HKOGLL_13290 | 80679 | 83189 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
45 | group_4 | HKOGLL_13645 | 12600 | 15215 | -1 | Outer membrane usher protein | Morganella morganii S5 | |
46 | group_4 | HKOGLL_13695 | 21063 | 23720 | -1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
47 | group_124 | HKOGLL_13775 | 47294 | 49786 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
48 | group_3446 | HKOGLL_15030 | 69272 | 71674 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
49 | group_4 | HKOGLL_17330 | 22574 | 25072 | 1 | fimD | Outer membrane usher protein FimD/PapC | Morganella morganii S5 |
50 | group_6 | F4V73_RS00860 | 179395 | 181806 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
51 | group_6 | F4V73_RS01045 | 222933 | 225470 | 1 | fimbrial biogenesis usher protein | Morganella psychrotolerans | |
52 | group_6 | F4V73_RS01675 | 366862 | 369450 | -1 | fimD | outer membrane usher protein FimD | Morganella psychrotolerans |
53 | group_6 | F4V73_RS01860 | 405766 | 408273 | 1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
54 | group_6 | F4V73_RS06000 | 1272239 | 1274554 | 1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
55 | group_6 | F4V73_RS07390 | 1542315 | 1544768 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
56 | group_6 | F4V73_RS08460 | 1745452 | 1748166 | 1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
57 | group_6 | F4V73_RS09375 | 1972333 | 1974834 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
58 | group_6 | F4V73_RS10255 | 161188 | 163743 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
59 | group_4 | F4V73_RS10360 | 181693 | 184197 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
60 | group_124 | F4V73_RS10835 | 302712 | 305252 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
61 | group_6 | F4V73_RS10900 | 320896 | 323451 | 1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
62 | group_4 | F4V73_RS10935 | 328098 | 330749 | 1 | outer membrane usher protein | Morganella psychrotolerans | |
63 | group_4 | F4V73_RS10980 | 336178 | 338850 | 1 | outer membrane usher protein | Morganella psychrotolerans | |
64 | group_6 | F4V73_RS12580 | 109377 | 111890 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
65 | group_6 | F4V73_RS13320 | 292172 | 294724 | 1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
66 | group_2836 | F4V73_RS14220 | 60674 | 63187 | -1 | fimbria/pilus outer membrane usher protein | Morganella psychrotolerans | |
67 | group_4 | PMI_RS01235 | 303249 | 305876 | 1 | outer membrane usher protein | Proteus mirabilis HI4320 | |
68 | group_4 | PMI_RS01285 | 312542 | 315157 | 1 | mrpC | MR/P fimbria usher protein MrpC | Proteus mirabilis HI4320 |
69 | group_4 | PMI_RS01440 | 354355 | 356877 | 1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
70 | group_136 | PMI_RS02640 | 576156 | 578690 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
71 | group_136 | PMI_RS05165 | 1128290 | 1130665 | 1 | pefC | PefC/AfrB family outer membrane usher protein | Proteus mirabilis HI4320 |
72 | group_136 | PMI_RS05725 | 1246395 | 1248809 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
73 | group_136 | PMI_RS05765 | 1258043 | 1260436 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
74 | group_136 | PMI_RS07095 | 1548820 | 1551423 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
75 | group_4 | PMI_RS09270 | 2025557 | 2028043 | 1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
76 | group_136 | PMI_RS10900 | 2399764 | 2402271 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
77 | group_4 | PMI_RS10945 | 2408787 | 2411285 | -1 | PapC/FimD family outer membrane usher protein | Proteus mirabilis HI4320 | |
78 | group_136 | PMI_RS12525 | 2776918 | 2779461 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
79 | group_3024 | PMI_RS19090 | 2868243 | 2868446 | -1 | FimD/PapC N-terminal domain-containing protein | Proteus mirabilis HI4320 | |
80 | group_136 | PMI_RS13455 | 2980466 | 2982997 | 1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
81 | group_136 | PMI_RS15280 | 3389729 | 3391642 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
82 | group_136 | PMI_RS16660 | 3672004 | 3674529 | -1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 | |
83 | group_136 | PMI_RS17130 | 3767793 | 3770414 | 1 | fimbria/pilus outer membrane usher protein | Proteus mirabilis HI4320 |