Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 51.8 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 87.3 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 41.8 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 87.3 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 51.8 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 41.8 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 87.3 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 51.8 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 41.8 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 51.8 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 87.3 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 41.8 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 51.8 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 87.3 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 41.8 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 40.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 50.9 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 61.2 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 69.1 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 39.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 40.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 44.7 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 827 47 7 866 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 685 43 10 834 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 639 41 13 827 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 0.0 556 37 11 807 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 1.45e-163 500 35 14 830 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46009 2.35e-93 317 29 28 875 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 1.86e-89 306 29 26 870 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P37924 9.24e-85 293 29 22 851 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XDD1 4.59e-84 291 28 29 872 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33129 1.94e-83 289 29 29 886 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P75857 3.37e-83 288 28 29 872 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P77468 7.04e-81 282 27 23 879 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P42915 1.01e-80 281 28 25 813 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P43662 2.8e-80 280 27 24 851 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46000 3.71e-63 232 27 17 699 3 fasD Outer membrane usher protein FasD Escherichia coli
P33397 1.15e-62 230 27 22 810 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P53517 1.6e-62 230 27 29 833 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33341 1.9e-62 229 26 24 826 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P45997 3.49e-62 229 27 22 810 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33408 1.11e-61 228 26 23 803 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P21647 1.35e-61 227 26 30 854 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q56983 1.77e-60 224 25 27 859 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.77e-60 224 25 27 859 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P45998 4.42e-59 220 27 21 809 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 1.38e-53 204 25 29 797 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P37868 4.97e-53 202 26 24 757 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P26949 4.25e-48 187 23 24 847 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 2.33e-46 182 25 29 866 3 aggC Outer membrane usher protein AggC Escherichia coli
P53513 1.74e-42 170 23 26 784 3 cssD Outer membrane usher protein CssD Escherichia coli
P15484 6.06e-42 169 26 26 674 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53512 1.62e-41 167 23 28 814 3 cssD Outer membrane usher protein CssD Escherichia coli
P33410 8.16e-40 162 24 31 882 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P12050 1.34e-39 161 23 23 748 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 3.04e-37 147 32 10 331 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 1.41e-35 145 27 12 484 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45420 2.36e-31 135 24 38 850 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 3.39e-26 119 25 15 449 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 1.3e-13 77 23 12 355 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.61e-12 73 23 10 355 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10935
Feature type CDS
Gene -
Product outer membrane usher protein
Location 328098 - 330749 (strand: 1)
Length 2652 (nucleotides) / 883 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042623 MR/P fimbria usher protein MrpC VF1233 Adherence

Protein Sequence

MVIPLSTGPRRRLTVLISFILAGFMPAAYPDNQDIDFNTDILDVNDKQNIDLSDFSRAGYIMPGTYDFFIRVNNSELPDIYPVPYIVPPDDPKGSVACLSPALVAQTGLKPAWTERLRWWNNGQCLDTASLPGMSLSPKLSDSVLILTVPQAYLEYTAANWDPPSRWDEGISGVMFDYNLNAGVNDPAQGKQTQQVTGNGTLGVNLGVWRARADWQGNFRHSTGTGERSERNWTWSQTYIYRAIAPLQAKLTMGETFSRSDIFDNFRYIGINLMTDDNMLPPNLRGYAPEVTGVAKTNAKITVSQQGRVIYETQVAPGPFRIQDINDAVSGKLDVRVEEQDGSVQSFQMDTANIPYLTRPGRVQYKLSAGQPSEIGRHAKGPVFGMGEFSLGVSNGWSIYGGSLVAGDYNAASLGVGRDLMAFGAISFDATQSFARLPREDKQYRGGSYRLSYSKRFEELDSQVTFAGYRFSERDFMSMNQFLDRRYHDNSADNNKELYTIMLSKQFPDIGLSTYLNYSHQTYWNRPDNDNYNLSLAKYMDIGSYKNINISLSAYRNKFQSKNDDGMYLNISMPWGDRATVSYNSVINRGGNSHNVSYFDRPDDNNSYRLGAGLSSNGKASADGYYMRYADSALVTASASHIDGEYTSASVSLQGGVTMTPQGGALHRINMPGSARLLVDTSGVAGVPVRSTGALSYTNRFGKAVLPDMNNYFRNSAGIDINKLPENAEARRSVQQVTLTEGAIGYRQFDVLSGQKAMATVRLSDGSTPPFGAVIMSEDKRELGIVNDGGQVYLSGINSADVLTLRRGSEPACRITIPELQPGQSLSTLLLTCNIQPAAVTEKVEQPSQPVSPVFPVSGGKWLNTAVSPVLSPPTRNEMSDSL

Flanking regions ( +/- flanking 50bp)

TATTGGGTTTCAAGCTGGAATATTATTAAACCGAGCTGATTGGATCCACTATGGTAATTCCGCTGAGTACCGGCCCGCGCCGGAGACTGACAGTTTTAATCTCATTTATTCTGGCCGGATTTATGCCGGCGGCTTATCCGGATAATCAGGATATCGACTTTAATACTGATATTCTGGATGTAAATGATAAACAGAATATCGATCTTTCTGATTTTTCCCGGGCGGGTTATATCATGCCGGGGACGTATGATTTTTTTATCAGGGTAAATAACAGTGAATTACCGGATATTTATCCGGTGCCTTATATCGTTCCGCCGGACGACCCTAAAGGGAGCGTTGCCTGCCTTTCACCTGCGCTGGTTGCTCAAACCGGACTGAAACCGGCATGGACAGAGCGTTTGCGCTGGTGGAATAACGGTCAGTGTCTGGATACCGCATCACTGCCCGGCATGTCTTTATCACCGAAACTGAGTGACAGTGTTCTGATTCTGACAGTACCGCAGGCCTATCTCGAATATACGGCGGCAAACTGGGATCCGCCATCCCGCTGGGATGAAGGTATTTCCGGTGTGATGTTTGATTACAATCTTAATGCCGGCGTGAATGACCCGGCACAAGGTAAGCAAACTCAGCAAGTTACCGGCAACGGGACACTTGGTGTGAATTTAGGTGTCTGGCGCGCCCGTGCCGACTGGCAGGGAAATTTCCGCCACAGCACCGGAACCGGTGAGCGCTCTGAGCGCAACTGGACATGGAGCCAGACCTATATTTATCGTGCTATTGCGCCATTACAGGCGAAACTGACGATGGGAGAGACATTCTCCCGCTCAGATATTTTTGATAATTTCCGCTACATCGGTATCAACCTGATGACCGATGACAATATGCTGCCGCCGAATCTGCGTGGCTATGCGCCGGAAGTCACCGGTGTGGCAAAAACAAACGCCAAAATTACTGTCAGCCAGCAGGGACGGGTTATCTATGAAACCCAGGTCGCCCCGGGACCGTTTCGTATTCAGGATATCAATGATGCGGTCAGCGGTAAGCTGGATGTCAGAGTCGAAGAACAGGACGGTTCCGTTCAGTCATTTCAGATGGATACGGCAAATATTCCGTATCTGACACGTCCGGGTCGCGTGCAATATAAATTGTCTGCCGGGCAGCCTTCAGAGATCGGACGTCATGCAAAAGGGCCGGTCTTCGGGATGGGCGAATTTTCACTCGGGGTCAGTAACGGCTGGTCCATATACGGTGGTTCGTTGGTCGCCGGTGATTACAATGCGGCTTCTCTTGGTGTGGGTCGTGATTTGATGGCCTTCGGGGCCATCTCTTTTGATGCAACACAGTCATTTGCACGTCTTCCCCGTGAAGACAAACAGTATCGCGGTGGTTCATACCGTCTGAGCTATTCCAAACGCTTTGAAGAGCTGGACAGCCAGGTCACGTTTGCCGGTTATCGTTTTTCCGAACGCGATTTTATGAGTATGAATCAGTTCCTGGACAGGCGTTACCACGACAATAGTGCGGATAATAATAAAGAGCTTTATACCATCATGCTCAGTAAGCAGTTCCCTGATATCGGGCTGAGTACCTATCTGAATTACAGCCACCAGACTTACTGGAATCGTCCGGATAATGACAACTATAACCTGTCATTGGCTAAATATATGGATATCGGCAGCTACAAAAATATCAATATCAGTCTGTCTGCGTACCGTAATAAATTTCAGAGCAAAAATGATGACGGTATGTACCTCAATATCAGTATGCCGTGGGGCGATCGCGCCACTGTCAGTTACAACAGTGTTATTAACCGTGGCGGAAATTCCCATAACGTCAGTTATTTCGACCGTCCGGATGATAACAATAGTTACCGTCTCGGCGCGGGGCTGAGCAGCAACGGCAAAGCATCCGCAGACGGATATTACATGCGGTATGCCGACAGCGCACTGGTGACTGCCAGCGCAAGTCATATCGACGGGGAATATACCTCAGCCTCTGTTTCTCTTCAGGGCGGGGTAACCATGACACCTCAGGGCGGCGCACTCCACCGGATCAACATGCCGGGCAGCGCACGGCTGCTGGTGGATACATCAGGCGTTGCCGGTGTTCCGGTAAGAAGTACCGGCGCACTCAGTTACACCAACCGCTTCGGTAAAGCGGTACTTCCGGATATGAATAATTACTTCCGGAACAGTGCCGGGATCGACATCAATAAATTACCTGAAAATGCAGAAGCACGCCGCTCGGTTCAGCAGGTGACCCTGACTGAAGGCGCAATCGGCTACCGTCAGTTTGATGTGTTATCCGGGCAGAAAGCGATGGCGACCGTTCGTTTGTCTGACGGCAGCACACCGCCGTTTGGTGCGGTAATTATGTCAGAAGATAAGCGCGAACTGGGAATTGTTAATGATGGCGGACAGGTCTATCTCAGCGGTATTAACAGCGCAGATGTACTGACGCTGCGCCGTGGCAGTGAGCCTGCATGCCGGATAACCATTCCTGAACTTCAGCCCGGACAATCACTGTCCACACTTTTACTGACCTGCAATATACAACCTGCCGCAGTGACTGAGAAAGTTGAACAACCGTCGCAACCTGTATCGCCTGTATTCCCTGTATCCGGCGGGAAATGGCTGAATACTGCGGTAAGCCCTGTTTTATCACCACCCACACGTAACGAAATGAGTGATTCACTATGATGTCAGTTAAACAAATCAGTATTACTGTGCTTGCCGCCGCCATGTTGACG