Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 18.6 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 20.8 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 20.8 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 18.6 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 20.8 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 18.6 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 20.8 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 18.6 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 18.6 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 20.8 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 19.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 19.7 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 20.1 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 19.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 17.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 19.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 19.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 18.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 21.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 21.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 19.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42915 1.8e-19 97 23 19 596 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33388 7.89e-13 75 21 21 615 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P15484 1.86e-12 74 22 19 583 3 None Outer membrane usher protein CS3-2 Escherichia coli
P45998 2.47e-12 74 24 27 637 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 5.16e-12 73 23 27 641 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.77e-11 71 23 26 639 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P43662 1.95e-11 71 21 21 629 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 1.5e-10 67 23 10 297 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P53517 1.94e-10 68 20 23 626 3 afaC Outer membrane usher protein AfaC Escherichia coli
P53512 3.49e-10 67 27 2 195 3 cssD Outer membrane usher protein CssD Escherichia coli
P76137 7.7e-10 65 23 10 304 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P53513 1.93e-09 65 26 2 195 3 cssD Outer membrane usher protein CssD Escherichia coli
P33408 2.95e-09 64 20 22 624 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P77468 4.13e-08 60 21 34 820 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33410 5.68e-08 60 22 22 655 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P77196 1.55e-07 58 23 8 265 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P46005 2.74e-07 58 20 24 627 3 aggC Outer membrane usher protein AggC Escherichia coli
P06970 4.97e-07 57 25 12 330 3 faeD Outer membrane usher protein FaeD Escherichia coli
P21647 7.8e-07 56 28 2 125 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q56983 1.27e-06 55 22 9 342 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.27e-06 55 22 9 342 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P75857 2.05e-06 55 28 4 142 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P12050 2.93e-06 54 21 19 533 3 fanD Outer membrane usher protein FanD Escherichia coli
P26949 4.82e-06 53 32 1 112 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q8XDD1 8.08e-06 53 28 4 142 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P53514 1.73e-05 52 25 3 161 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P30130 2.32e-05 52 21 11 321 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33341 3.4e-05 51 19 18 623 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P07110 0.000187 48 25 1 122 1 papC Outer membrane usher protein PapC Escherichia coli
P37924 0.000189 48 24 6 201 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06000
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1272239 - 1274554 (strand: 1)
Length 2316 (nucleotides) / 771 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MNIQNLRISLFILISTALYTTGGFAAPATELLYLDVSVNKRAIPDLIPVRKEGDTFWLSEEESQSLNLNTETLPKQDGWIKLTPQPGFTFNYDPLTQSLAITAESSRLAGHQNKSSPEQGFLLKEDQIAPAIKGGVINYDLFASQDKYTDSASAYTELRAFGYGQGNFSSSFNTRISRTNDITDNTFTRLMTSWTYSNVDSLNVLTLGDSITGGQSGTNRVRFGGIRFSHNYTVQPNFNTASQPIYSSTAVLPSTVDLYIEGMKNSTQRVEPGQFTLNTAPYFSGAGNAQLVITDINGQQQKIDLSLYNTNQLLSPGLYTWDISTGWLRDGYSDRSFSYDPRLMVVGDGRYGLSNKITLAAHSEINSALQNTGAGYHWLISPYLGVFRTDAALSRYRNNNGSQWGTGWQWNNPQFNISADHQQFSGNYADMSVMAGNTLPKTSDSVFISQAFDNIGTLGSGWVTRQYPSAKVQYANISWTRTWDNSFTLSVNATKELTNQNDHALYLMLNIPLSSEHYVSLQTSYEDQRVNQQIQYQKSLVPDKTGWGWGLSSLTGHNNSLHADISRRNEINEWQLGYNRNNSQDSWFAGSNGAIGLLDGQFYFMRTLGNAFAIADTSGIPEIPVYLQNVEVGKTDENGFLLLNDLYGYEPQKIRINALSLPADYRIRDTEKNVILRDGSGTRVTFNVYQTRALLLKLTQKGGQPMPFAATVTTENNTQKTIVGYDSRIYLESWAPGETINVTWPEGQCHIQIPDIKQSTAAFTEENAICL

Flanking regions ( +/- flanking 50bp)

GCCTATACCGGGCAACCTGTCATCAGGACAGACACTGAAAGTGACTATTAATGAACATTCAGAACCTCAGAATTTCGTTATTCATTCTGATTAGTACCGCCTTGTATACCACAGGTGGATTTGCGGCACCTGCAACAGAACTGCTTTATCTTGATGTTTCAGTTAATAAACGGGCAATACCGGATCTTATCCCGGTAAGAAAAGAAGGTGATACTTTTTGGCTGTCAGAGGAAGAAAGCCAGTCTCTGAACTTAAACACAGAAACATTACCCAAACAGGATGGCTGGATAAAACTAACGCCACAGCCCGGATTTACATTTAATTATGATCCTCTGACACAATCCCTCGCTATTACAGCCGAAAGCAGCCGGCTTGCCGGGCATCAGAATAAATCCTCCCCGGAACAGGGCTTTTTACTGAAAGAAGACCAGATAGCCCCGGCAATTAAAGGCGGGGTCATTAACTATGACCTGTTTGCCAGTCAGGATAAATACACAGACAGTGCCAGTGCATATACTGAACTGCGGGCATTTGGTTATGGTCAGGGAAATTTTTCATCATCATTTAATACCCGGATTTCCCGCACAAATGACATAACAGATAATACCTTTACCCGGCTGATGACATCCTGGACATACAGTAATGTTGATTCTTTAAATGTACTGACACTCGGAGACAGCATTACCGGCGGACAATCAGGGACCAACAGAGTCCGGTTCGGTGGTATCCGGTTTTCACATAACTACACCGTTCAACCTAATTTTAATACTGCATCACAACCTATTTACAGCAGTACCGCCGTATTGCCCTCGACGGTTGATTTATATATCGAGGGCATGAAAAACAGCACACAACGGGTTGAGCCGGGACAATTCACATTAAATACCGCACCCTATTTCTCCGGTGCCGGTAATGCGCAGCTTGTCATTACCGATATTAACGGACAGCAGCAGAAAATTGATTTATCGCTTTATAACACTAATCAATTATTATCCCCCGGGCTGTATACATGGGATATAAGCACCGGCTGGCTGCGTGATGGTTACAGTGACCGCTCTTTCAGCTACGACCCCCGGTTAATGGTTGTCGGTGACGGACGCTACGGATTAAGTAATAAAATTACACTGGCTGCACACAGTGAAATAAACAGTGCACTTCAGAATACAGGAGCTGGCTATCACTGGCTTATCTCACCTTATCTTGGCGTATTCCGGACTGATGCGGCACTGAGCCGTTACCGGAATAATAACGGGTCACAATGGGGTACCGGATGGCAATGGAATAATCCTCAGTTCAATATATCGGCTGATCATCAGCAATTCAGCGGTAATTATGCGGATATGTCGGTAATGGCAGGTAATACGCTGCCGAAAACATCTGACAGTGTATTTATCAGTCAGGCATTTGACAATATAGGAACACTTGGCAGCGGATGGGTAACCAGACAATATCCGTCTGCAAAAGTGCAGTATGCGAATATCTCCTGGACTCGGACATGGGATAATTCATTTACATTATCAGTCAATGCAACCAAAGAACTGACAAATCAGAATGATCATGCCTTATATCTTATGCTTAATATTCCCTTATCTTCTGAGCATTATGTATCGCTTCAGACCAGCTATGAAGATCAGCGCGTTAACCAACAAATTCAATACCAGAAAAGTCTGGTACCGGACAAAACAGGTTGGGGATGGGGATTATCATCCCTGACAGGTCATAATAATAGTCTTCATGCCGATATCAGCCGCCGTAATGAAATAAACGAATGGCAGCTTGGTTATAACCGTAATAACAGTCAGGACAGCTGGTTTGCCGGCAGTAATGGAGCGATAGGTCTTCTGGATGGTCAATTTTATTTTATGCGGACGCTGGGAAATGCATTCGCAATTGCTGACACATCCGGAATACCGGAGATCCCGGTCTATCTGCAAAATGTTGAGGTGGGTAAAACAGATGAAAACGGATTTTTACTACTTAATGACCTGTATGGATATGAACCACAAAAAATAAGAATTAATGCTTTGTCACTTCCTGCCGATTATCGTATCAGAGACACTGAAAAAAACGTGATATTAAGAGATGGCAGCGGAACCAGAGTAACCTTTAATGTATACCAAACACGGGCCTTGTTGCTGAAATTGACACAAAAAGGCGGGCAACCTATGCCCTTTGCAGCAACAGTGACAACAGAAAATAACACACAAAAAACAATTGTCGGGTATGACAGCCGGATTTACCTGGAATCATGGGCTCCCGGAGAAACAATTAATGTGACCTGGCCGGAAGGTCAATGTCATATTCAGATACCGGACATAAAACAAAGCACCGCAGCCTTTACTGAGGAAAATGCAATATGCTTGTAAATAATAACTATTTGATTTTCATTGGTATATTCTTCCTGTCTCCGACTGCA