Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 43.2 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 41.8 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 80.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 41.8 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 43.2 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 80.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 41.8 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 43.2 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 80.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 43.2 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 41.8 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 80.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 43.2 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 41.8 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 80.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10935 F4V73_RS10935 40.7 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 42.4 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 40.7 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 45.0 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 37.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 35.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 36.7 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 687 41 10 848 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 546 36 15 849 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 1.46e-180 543 35 17 847 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 1.42e-156 481 34 21 846 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 2.65e-145 451 34 17 814 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 1.44e-83 289 28 24 851 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.28e-78 275 27 25 851 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 3.23e-77 270 28 23 793 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33129 4.31e-71 254 27 27 851 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P37924 2.24e-70 252 26 27 865 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43662 7.98e-68 244 26 25 843 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 2.04e-67 244 26 32 878 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 6.06e-63 231 24 26 857 3 afaC Outer membrane usher protein AfaC Escherichia coli
P75857 4.53e-62 228 25 27 851 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 8.99e-62 228 25 27 851 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33408 1.55e-61 226 25 22 797 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 3.89e-61 225 26 30 859 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 3.89e-61 225 26 30 859 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33397 1.66e-57 215 26 25 836 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 8.58e-57 213 26 24 836 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P26949 2.24e-54 206 25 26 822 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 7.47e-53 201 25 29 844 3 aggC Outer membrane usher protein AggC Escherichia coli
P45998 2.11e-52 200 25 26 838 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 1.5e-51 197 26 34 834 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33388 4.13e-51 196 25 26 792 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P53513 4.52e-51 196 23 26 813 3 cssD Outer membrane usher protein CssD Escherichia coli
P53512 8.94e-51 195 24 31 822 3 cssD Outer membrane usher protein CssD Escherichia coli
P33341 2.27e-46 182 23 23 853 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P46000 7.2e-46 180 25 17 705 3 fasD Outer membrane usher protein FasD Escherichia coli
P15484 5.86e-41 166 25 25 719 3 None Outer membrane usher protein CS3-2 Escherichia coli
P37868 1.31e-40 164 24 28 798 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 1.82e-39 160 25 33 778 3 fanD Outer membrane usher protein FanD Escherichia coli
P33410 4.76e-39 159 23 26 845 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q8X5K7 5.32e-34 137 28 12 359 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 1.58e-32 135 25 14 494 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P06970 7.27e-32 137 25 18 549 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.16e-26 120 22 32 832 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 3.01e-17 88 31 11 275 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.42e-15 82 31 11 275 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10360
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 181693 - 184197 (strand: -1)
Length 2505 (nucleotides) / 834 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MKLATTIKILAASIIVSLQISNAFAEEAVNFNTSFLDADSQEIDFSNFSRAHYVMPGTYLLAVKLNNNIIDSEEDILFYTPEDDKEITLPCITPELFKQLDLKEEWKNKANWLTQDNLQCLDTRAISDMQATGDIPDNKLNINIPQAYMEYNDPAWDPPARWDDGIAGFIFDYNATATYSKFQKDQDNGKNDKKEVVGYGDVGVNLGAWRVRAEWQGTGGDQPDSTKRWQWNQVYGYRALRSISARLMMGEQYLTSELFESFRYLGLSLETDENMFPPLLRGYAPEVAGVARTNATVIIRQGERIVYQEQVSRGPFRIRDMNYIGDGILNVTIKEQDGSEQHFTIETSRLATLTRPGQFLFKLAAGKPMADNHKTEGPDFGVGSFSWGMNNNTTLFGGALAAADYQNVSAGIGRDIAPFGVFSVKVSYSRAQLDNLADKQNKSGTSYSVTYSKEFDAINSQLTFAGYRFSERDYMTMNQFVDQRYRGGNTESSKEMYNIIFNKVFPSLRMNVYLNYSHQTFWNKPSINNYSMTLSRSFDWADKRNLSVSMSAYRTESDTSKDNGIYASLSVPLDDHKGMVSYSGSYNKKAHSNNINYYTDIDNASSYSLSVGEGDNNVNVAGFYSNEGGNNYLSLSGTYVQDDIVTLSGQSRGGMTLTTEGAAFHRSGNTMAPRILVDTNGAADISVRGTGKAVHSNHFGKAVIPTATAYSRSQLSLDLEDLPDNAEALTSVQTATMTSGAIGYRKFNIVEGYKIMSIIAMSDNSHPPFGASVLNDKSVEIGIIADNGAAYLTGIQPDQNLSVAWNGQTQCSIHIPATLTEDFKFNMLLPCLKK

Flanking regions ( +/- flanking 50bp)

CGCTTCCGCCACTGCATTAATGAATAAATCAATGGTGGTCGGCGTTATTTATGAAGCTCGCAACAACAATAAAAATACTCGCAGCTTCGATCATTGTATCCCTCCAGATAAGCAATGCATTTGCAGAAGAGGCAGTTAATTTCAATACCTCTTTTCTTGATGCCGATAGTCAGGAAATAGATTTTTCCAATTTCAGCCGTGCTCACTATGTTATGCCCGGTACTTATCTTTTAGCCGTAAAGCTAAATAACAATATTATTGATAGTGAAGAAGATATACTTTTCTACACGCCTGAAGATGATAAAGAAATAACACTCCCCTGTATTACGCCTGAATTATTTAAACAGCTTGATCTTAAAGAAGAATGGAAAAATAAAGCAAACTGGCTGACTCAGGATAACTTACAGTGTCTGGATACCCGCGCTATTTCTGATATGCAGGCAACAGGCGATATCCCCGACAATAAGCTGAACATTAATATTCCCCAGGCGTATATGGAGTACAACGATCCGGCATGGGATCCGCCTGCCCGCTGGGATGACGGTATTGCCGGCTTTATTTTTGACTATAATGCCACCGCGACCTACAGCAAATTCCAAAAAGATCAGGATAACGGAAAAAACGATAAGAAAGAGGTCGTCGGTTATGGTGATGTCGGGGTAAACCTCGGCGCCTGGCGGGTCCGTGCTGAATGGCAGGGAACCGGAGGCGACCAGCCTGACAGTACAAAACGCTGGCAGTGGAACCAGGTATACGGCTATCGCGCACTGCGTTCAATCAGTGCCCGCCTGATGATGGGTGAGCAGTACCTGACTTCCGAACTGTTTGAAAGCTTCCGCTACCTTGGTCTGAGCCTGGAAACAGATGAAAATATGTTTCCGCCACTTTTACGGGGTTATGCGCCTGAAGTGGCCGGGGTCGCACGCACCAATGCGACCGTTATTATCCGCCAGGGCGAGCGTATCGTGTATCAGGAACAGGTCAGCAGAGGTCCGTTCCGTATCCGTGATATGAACTATATCGGTGATGGTATTCTGAATGTCACCATTAAAGAACAAGATGGCAGCGAACAGCATTTCACCATTGAAACATCCCGCCTGGCGACATTAACGCGCCCGGGTCAGTTCCTGTTTAAACTGGCCGCCGGTAAGCCGATGGCAGATAACCATAAAACGGAAGGTCCCGATTTTGGGGTCGGCAGTTTTTCCTGGGGGATGAACAATAACACCACGTTATTCGGTGGTGCGCTGGCCGCTGCTGATTATCAGAATGTCTCTGCCGGGATCGGGCGCGATATCGCACCATTCGGGGTATTCTCCGTAAAAGTATCCTATTCCCGGGCGCAGTTAGATAACCTTGCAGATAAACAAAATAAGAGCGGCACATCTTACAGTGTTACCTATTCAAAAGAATTCGATGCTATTAACAGTCAGCTGACCTTCGCCGGTTATCGCTTCTCCGAGCGGGATTACATGACAATGAATCAGTTTGTCGACCAGCGCTATCGCGGCGGTAATACCGAAAGCAGCAAAGAGATGTATAACATCATCTTTAATAAGGTGTTTCCGTCTCTGCGCATGAACGTCTATCTGAACTACAGCCATCAGACATTCTGGAATAAGCCAAGCATCAATAACTACAGCATGACATTGTCACGCAGCTTTGACTGGGCAGATAAACGCAATCTCAGTGTCAGTATGTCGGCGTACCGGACAGAGTCTGACACATCCAAAGATAATGGTATTTACGCCAGTTTGTCCGTTCCGCTTGATGACCACAAAGGGATGGTCAGCTACAGCGGCAGTTATAATAAGAAAGCGCACAGTAACAATATTAACTATTACACTGATATTGATAATGCCAGCAGCTATTCTCTTTCCGTCGGGGAAGGCGATAATAATGTTAATGTCGCCGGTTTTTACAGTAATGAAGGGGGAAATAACTACCTTTCACTGAGCGGTACTTATGTGCAGGATGATATTGTGACACTATCTGGTCAGTCCCGTGGCGGCATGACCCTGACCACAGAAGGCGCGGCGTTCCACCGCAGCGGAAATACAATGGCACCGCGTATTCTGGTCGATACCAATGGCGCTGCCGATATTTCTGTACGCGGCACCGGGAAAGCGGTGCATTCAAACCATTTCGGAAAAGCCGTTATCCCGACAGCGACTGCTTATTCACGCAGCCAGTTATCACTGGATCTGGAAGACCTGCCGGATAACGCAGAAGCCCTGACATCTGTTCAGACTGCAACAATGACATCCGGCGCTATCGGCTACCGTAAATTTAATATCGTAGAAGGTTATAAAATTATGAGTATTATTGCTATGAGTGATAATTCTCATCCGCCATTCGGCGCATCCGTTCTGAATGACAAAAGTGTGGAGATCGGAATTATTGCAGATAATGGTGCGGCTTACCTGACGGGTATCCAGCCGGACCAAAATCTGAGTGTGGCCTGGAATGGACAGACTCAATGTTCAATCCATATTCCGGCGACACTGACTGAAGATTTTAAATTTAATATGCTGTTGCCCTGCCTGAAAAAATAAAGCGGCACAGACATTGTACATACCCGAATTGACAGATGATCCGTAAGGAA