Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 34.5 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 34.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 34.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 34.5 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 34.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 34.5 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 34.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 34.5 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 34.5 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 34.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 25.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 34.7 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 32.7 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS06000 F4V73_RS06000 19.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 28.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 30.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 26.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 34.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 35.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 27.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 30.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 1.75e-157 484 34 15 841 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 2.45e-148 461 34 22 863 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.71e-144 451 33 20 860 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 3.97e-140 438 35 15 814 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 7.27e-135 425 32 21 865 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.19e-134 424 32 19 864 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P77468 6.14e-133 420 31 21 865 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P37924 4.71e-128 407 31 19 865 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53517 1.55e-127 406 32 21 853 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 6.13e-125 399 32 21 845 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 6.13e-125 399 32 21 845 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46005 2.21e-121 389 31 20 852 3 aggC Outer membrane usher protein AggC Escherichia coli
P33408 2.75e-120 386 31 17 828 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P26949 5.26e-117 377 30 19 837 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33388 2.45e-98 327 30 22 823 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33397 2.48e-88 301 28 29 864 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 1.4e-87 299 28 29 864 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 6.27e-87 298 29 26 851 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45997 2.87e-86 295 27 27 861 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P15484 5.99e-84 291 29 11 735 3 None Outer membrane usher protein CS3-2 Escherichia coli
P21647 1.2e-78 274 27 18 821 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q8X5K8 5.03e-77 261 32 9 515 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33341 2.9e-73 259 25 15 803 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
Q8X5K7 1.45e-68 234 38 7 336 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P46000 6.22e-68 244 25 23 854 3 fasD Outer membrane usher protein FasD Escherichia coli
P33410 6.3e-66 239 26 25 851 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P77196 8.79e-64 233 26 22 812 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53512 1.1e-60 224 26 19 811 3 cssD Outer membrane usher protein CssD Escherichia coli
P07110 4.11e-59 219 25 25 840 1 papC Outer membrane usher protein PapC Escherichia coli
P53513 6.29e-59 218 26 18 812 3 cssD Outer membrane usher protein CssD Escherichia coli
P53514 1.72e-57 214 25 28 842 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 1.29e-55 209 26 29 830 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 2.2e-53 202 25 22 798 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P37868 3.75e-46 181 25 27 794 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 3.04e-43 164 30 9 381 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 9.43e-42 160 30 9 381 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P12050 8.04e-37 152 23 25 776 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 1.58e-25 117 23 29 766 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 1.26e-05 52 29 2 126 3 faeD Outer membrane usher protein FaeD Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01860
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 405766 - 408273 (strand: 1)
Length 2508 (nucleotides) / 835 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MLLNINQAKADDYFDPAFVTDPSGKAVSIDLSSFERASFIPGTYRVDIYLNEQYVNSQDILFFGDKNTGELQPCLSDTQLAGYGIKPEFYSLLDKSGECVNIRDIQGAKATFIGGQNRLYLNLPQIAFDQKALEANQESLWDDGIPVMFTDYSMSGTHHNNTKNNDKSDTLYLNLRSGVNVGAWRYRNHSTWNKYSDGNSKWESQLNYLERPLRAIKSNILIGDNFSDSDVFDNVSFRGVKLWSDNQMRPNYSNIYAPTITGVATIDSTIEVSQNGYVIYRTNVPAGAYELTDVSPLNNGSNLYVVQRGIDGSERRFIIPFSSLDFMQRKGTYKYSITAGQYRMNNTSSYNDDSSSGDKTKFVQSDAFYGLTDNSTLFGGVQAASRYQAYDIGLGMNIPVVGALASDIMFTRAAPDSVDDMNGRAFRLRYSKSLENTGTNISFASYRYISGDYITMTDMFDYYSGKADTEAYLMRKGQMDLSVSQALPGDFGLLSVSVSHQTYDTYYSNQEKNVESYNIGYSNTINTVSYNLNYSYYKNTINKVNNRNDDIEKNRENDHVVSVSFSIPLGGEYKDNWINYGASYNKYGDFDNYVGVGGVALDNNRLSWNVQQGYGNRDRGNYGSVYGKYKSGYGDANAGYSYKKDNRQLSYGLNGSFVMSQYGATLSRPLGDTNGLIYAPGAEGVRIINSSEARTDSSGLAIISNLIPYRNNVVNLDTRTLPENAEIDAALKEVYPTRGAMVLVDYDTHLGAKILVTLYDSTGNQIPFGAYAVADNKSERFYVSNYGRLYLTGATQADNVRVFWGDDNQYQCQFSYQIEGKRKINGLYIFDEICQ

Flanking regions ( +/- flanking 50bp)

TGTTAAGGGCACCGGCCAGAACCGAAATTTATAGTTCAATAATTACTGTTATGTTATTGAACATAAACCAGGCAAAAGCAGATGATTATTTTGATCCTGCATTTGTCACCGACCCGTCAGGTAAAGCGGTATCGATAGATTTATCATCATTTGAACGGGCATCATTTATACCCGGTACTTATCGTGTTGATATTTACCTAAATGAGCAGTATGTAAATTCACAAGACATTTTATTCTTTGGTGATAAAAATACCGGAGAATTACAGCCCTGTTTATCTGATACCCAACTTGCAGGTTATGGAATAAAACCGGAATTCTACTCTCTGCTGGATAAATCCGGAGAGTGTGTGAATATCCGGGATATTCAGGGAGCAAAGGCTACATTTATAGGCGGACAAAACCGTTTATATCTTAATCTGCCACAGATAGCATTCGATCAAAAAGCGCTGGAGGCAAACCAGGAGTCACTCTGGGATGACGGTATTCCTGTTATGTTTACAGATTACAGTATGTCCGGAACTCATCACAATAATACAAAAAATAATGATAAAAGTGATACTCTTTATCTGAATTTACGTTCAGGTGTGAATGTTGGCGCATGGCGATATCGTAACCACAGTACCTGGAATAAATATTCTGACGGAAATTCAAAGTGGGAAAGTCAGCTCAATTATCTTGAGAGACCATTACGAGCAATTAAAAGTAATATTCTTATTGGTGATAATTTTTCGGATTCCGATGTTTTTGATAATGTATCCTTCCGTGGTGTAAAATTATGGTCTGATAATCAAATGAGACCAAATTACTCCAATATTTACGCACCGACTATTACTGGTGTTGCCACGATTGATTCAACTATCGAAGTTTCCCAGAATGGCTATGTGATATATCGTACTAACGTACCTGCCGGCGCGTACGAATTAACTGATGTCTCCCCGTTAAACAACGGGAGCAATTTATATGTTGTACAACGGGGTATAGACGGTAGCGAGAGACGATTTATTATTCCGTTCTCTTCGCTGGATTTTATGCAGCGTAAAGGTACATATAAATACAGTATTACAGCAGGCCAGTACCGCATGAATAATACGTCTTCTTATAATGATGACAGTAGTAGTGGCGATAAAACTAAATTTGTTCAGTCTGATGCTTTCTATGGACTAACGGATAATTCCACATTATTCGGTGGGGTACAGGCGGCATCCCGTTATCAGGCCTATGATATTGGTCTGGGAATGAATATCCCCGTTGTCGGTGCGCTGGCTTCCGATATTATGTTTACCCGTGCCGCTCCTGATTCTGTTGATGATATGAATGGCAGAGCATTCAGGTTACGTTATTCGAAGTCCCTTGAAAATACGGGAACAAATATTAGCTTTGCAAGTTATCGCTATATTAGTGGTGACTATATTACGATGACCGATATGTTTGATTATTATTCAGGAAAAGCGGATACAGAGGCGTATCTGATGCGCAAGGGGCAGATGGATCTGTCTGTTTCGCAGGCATTACCCGGAGACTTTGGTCTGCTGTCGGTATCTGTGTCCCATCAAACATATGATACGTATTATAGTAATCAGGAAAAGAATGTTGAGTCTTACAATATAGGCTATTCCAATACCATAAATACAGTTTCATATAACCTGAATTATTCCTATTATAAAAATACAATTAATAAAGTTAATAATAGAAATGATGATATTGAAAAAAACAGAGAGAATGATCATGTGGTTTCTGTCAGCTTCAGTATTCCATTAGGCGGAGAATATAAAGATAACTGGATAAATTATGGTGCATCTTATAATAAATATGGTGATTTTGATAATTATGTAGGTGTGGGCGGTGTTGCACTGGATAATAACCGGCTATCCTGGAATGTGCAGCAGGGATACGGCAACCGGGATCGTGGTAATTATGGCAGTGTATACGGAAAATATAAAAGCGGATATGGCGATGCTAATGCAGGCTATTCCTATAAAAAAGATAACCGTCAATTATCCTATGGTCTGAATGGCTCCTTCGTTATGAGTCAGTATGGTGCAACGCTATCCCGCCCGTTAGGGGATACAAACGGGTTAATTTATGCGCCGGGAGCTGAAGGTGTACGTATTATTAACAGCTCAGAAGCCAGAACAGACAGCTCCGGTTTGGCCATTATTTCTAATCTTATACCTTACCGTAATAATGTCGTTAATCTTGATACGCGGACATTACCTGAGAATGCGGAAATTGACGCGGCATTAAAGGAAGTATATCCGACCCGTGGTGCGATGGTATTAGTTGATTATGATACCCATCTTGGTGCGAAAATATTAGTGACTCTGTATGACAGTACGGGTAACCAAATACCATTTGGTGCTTATGCGGTAGCTGATAATAAATCAGAACGGTTTTATGTCAGTAATTACGGACGATTATATCTTACAGGTGCAACACAAGCAGATAATGTCCGGGTTTTCTGGGGAGATGACAATCAATATCAATGTCAATTCTCTTATCAGATCGAAGGTAAGCGGAAGATTAACGGACTGTATATTTTTGATGAGATTTGTCAGTGATAATGGCGTGTTTTATGGTGATTAATTTAGTTAAGATAAACTATTTTCTC