Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 41.4 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 41.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 36.6 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 41.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 41.4 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 36.6 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 41.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 41.4 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 36.6 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 41.4 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 41.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 36.6 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 41.4 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 41.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 36.6 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 35.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 40.9 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 41.9 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 41.1 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 42.4 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 38.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 38.6 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P53514 0.0 1719 100 0 828 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P07110 0.0 644 41 14 831 1 papC Outer membrane usher protein PapC Escherichia coli
P77196 0.0 607 37 14 841 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P76655 0.0 579 37 13 792 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 2.04e-172 521 35 13 804 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 1.17e-92 313 29 27 857 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33129 8.44e-91 308 27 21 831 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46009 2.7e-85 293 27 30 868 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 4.33e-75 265 28 27 843 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75857 2.12e-73 260 26 27 854 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 5.03e-73 259 26 27 854 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33341 5.5e-72 256 28 29 853 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P42915 8.21e-72 255 27 21 814 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P77468 4.39e-71 254 27 25 866 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 2.37e-65 237 27 25 809 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P21647 4.78e-59 219 25 26 837 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33388 3.28e-57 213 26 25 841 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33408 4.84e-57 213 25 25 795 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P26949 3.7e-56 211 26 26 834 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P45997 2.62e-55 208 25 28 778 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 9.41e-55 207 25 25 774 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 1.16e-54 206 25 29 782 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P53517 2.75e-53 202 25 27 856 3 afaC Outer membrane usher protein AfaC Escherichia coli
P53512 6.97e-50 192 26 27 784 3 cssD Outer membrane usher protein CssD Escherichia coli
P46000 1.22e-49 191 25 35 862 3 fasD Outer membrane usher protein FasD Escherichia coli
P53513 7.71e-49 189 26 28 786 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 1.34e-47 185 24 29 850 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56983 1.4e-47 185 25 34 865 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.4e-47 185 25 34 865 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46005 1.96e-45 179 24 25 851 3 aggC Outer membrane usher protein AggC Escherichia coli
P33410 1.08e-43 174 23 25 862 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 4.3e-42 169 25 23 697 3 None Outer membrane usher protein CS3-2 Escherichia coli
P12050 1.85e-41 166 23 27 794 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 1.73e-31 130 29 9 325 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 1.87e-31 132 25 14 497 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P06970 5.23e-24 112 25 15 411 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 2.23e-18 94 21 30 845 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 8.05e-06 52 21 14 348 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.1e-05 52 24 4 161 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09270
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 2025557 - 2028043 (strand: 1)
Length 2487 (nucleotides) / 828 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042611 fimbria/pilus outer membrane usher protein VF1236 Adherence

Protein Sequence

MLIPYSPHTIWKTICATLLLSLAFFSQAEQDDSVEFNIHMLDAEDRDNVDLSRFSTSNYIIPGMYYLDIRLNGRDFPRQNINYIEVADNHSVACIDPTLLKKLTINQENQKYIKQISPDCFDISQLPGISIKNDGGVLDITLPRSLMKYEESDWTPPELWDSGVSGLIFDYTLTGTSTRPNKGNNNNTLTGYGQAGLNLGEWRLRAEYQGNYSSEYSSNNRFDWNQIYAYKPLPDLAAKLTVGETYLNSQIFDSFRFTGANLQSDERMLPPSLQGYAPEIHGIANTNAKVTVTQNGRLIYETTVPAGPFVINHLQNTVQGQLDVRVEEQNGKINEFQVQTANLPYMTRPGSVRFNTSLGQSSVNNHKMQGPLFYQGDFSWGMNNTWSLYGGTLLTAKDYNAWSLGIGHDMGRFGTLSGDITQSYSKTYDNEKINGMSFKLNYAKTFDEYHSTITFAGYRFSEKTFRSFSQYIDERYNGINNNGYEKEMYTITGNKTFWADDAEKSTTLYLSYRHQNYWDKNTQEQYGVTVSRNFSIMGIEQINTNLSAFRTQYKGNTDDTLSFNISLPLGSGRNIGYNLQDNNGKVTQMASYADNRDYNNLWRIRAGLSSDKKANTDGYYQHRSQYAEINANASYQQDNYLAVGATIKGGFTATRYGAALHSSSMTSSTARIMVDTDGVAGVPFNGQSTTTNRFGIGVLTDLTSYNNVDARIDVDKMDQDIETRKAIASTTLTEGAIGYYQFPVRQGERLMAVLQTTDNKYPPFGAEVTNQKGESIGMVMEEGLVYIAGVNLNESLNVIWNGKTQCSITIPAEITDPLKHQSLVCQDR

Flanking regions ( +/- flanking 50bp)

ATTTATTATTTAATTACTTTTTATTTAATATAATAATTAGGCGTTTATTCATGTTAATTCCTTATTCACCCCACACAATATGGAAGACCATTTGTGCGACTTTGCTATTAAGCTTGGCGTTTTTCTCACAAGCAGAGCAGGACGATTCTGTGGAATTTAACATTCATATGCTAGACGCGGAAGATCGCGATAATGTCGACCTTTCACGTTTTTCTACCTCAAATTATATCATTCCGGGTATGTACTATTTAGATATTCGTCTAAATGGTCGCGACTTTCCTCGCCAAAATATTAATTATATTGAAGTAGCAGATAATCATTCCGTGGCTTGTATCGACCCTACTCTTTTAAAAAAGTTAACAATCAACCAAGAAAACCAAAAATATATCAAACAAATATCACCAGATTGTTTTGATATTAGCCAATTACCCGGTATCTCGATTAAAAATGATGGTGGTGTACTTGATATCACGTTACCGCGCTCATTAATGAAATATGAAGAATCTGATTGGACACCTCCGGAGCTTTGGGATAGCGGGGTCTCTGGGCTTATTTTTGATTATACACTAACAGGAACGTCAACTCGCCCTAATAAAGGCAATAATAACAATACGTTAACTGGTTATGGTCAAGCGGGATTAAACTTGGGTGAATGGCGTTTACGAGCTGAATATCAAGGCAATTATTCTTCTGAATATTCATCTAACAATCGTTTTGATTGGAACCAAATTTATGCCTATAAGCCATTACCTGATCTCGCAGCTAAATTAACGGTTGGGGAAACTTATTTAAACTCTCAAATTTTTGATAGTTTCCGTTTTACAGGAGCCAATTTACAAAGCGATGAGAGAATGTTACCCCCTTCTCTCCAAGGCTATGCACCTGAAATTCATGGCATCGCCAATACCAATGCAAAAGTGACGGTAACCCAAAATGGACGTTTAATTTATGAGACAACCGTACCTGCTGGCCCTTTCGTGATTAACCATCTACAAAATACCGTACAGGGTCAACTCGATGTTAGAGTTGAAGAGCAAAATGGTAAGATTAACGAATTTCAAGTGCAAACCGCTAATTTGCCTTATATGACTCGCCCAGGATCTGTGCGTTTTAATACCTCACTGGGACAGTCATCCGTGAACAACCATAAAATGCAAGGCCCTCTTTTCTATCAAGGGGATTTTTCATGGGGGATGAATAATACATGGTCTCTCTATGGTGGTACTTTACTTACCGCTAAAGATTATAACGCATGGTCTTTAGGTATCGGCCATGATATGGGACGTTTTGGTACCCTTTCTGGTGATATTACACAGTCTTATAGCAAAACCTATGATAATGAAAAAATCAATGGGATGTCTTTTAAACTAAACTATGCAAAAACTTTTGATGAGTACCACAGTACCATTACTTTTGCAGGTTATCGTTTCTCAGAAAAAACATTTCGCTCTTTTTCTCAGTATATTGATGAGCGTTATAACGGCATCAATAATAATGGCTATGAAAAAGAAATGTACACCATTACCGGTAATAAAACTTTTTGGGCAGATGATGCAGAGAAATCGACCACCCTCTATCTCTCTTATCGCCACCAAAATTACTGGGATAAAAATACTCAAGAGCAGTATGGTGTCACAGTAAGTCGTAATTTTTCCATTATGGGGATTGAGCAAATCAATACCAACTTGTCAGCATTTCGTACCCAATATAAAGGGAATACTGACGATACGCTCTCTTTTAATATTTCACTACCATTAGGAAGTGGTCGCAATATTGGTTATAACTTGCAAGATAACAATGGCAAAGTGACACAAATGGCCTCTTATGCTGATAATCGCGATTATAATAATTTATGGCGCATAAGAGCAGGCTTAAGTTCGGATAAGAAAGCCAATACCGATGGTTATTATCAACATCGTTCTCAGTATGCAGAAATCAATGCCAATGCAAGCTATCAACAAGATAATTACTTAGCAGTGGGCGCAACGATAAAAGGCGGTTTTACTGCTACTCGTTATGGCGCTGCATTACACAGTAGCAGTATGACCTCTAGCACCGCAAGAATAATGGTGGATACTGATGGTGTTGCAGGGGTGCCCTTTAATGGTCAAAGCACGACTACGAACCGCTTCGGCATTGGCGTACTAACCGACTTAACAAGTTATAACAATGTTGATGCACGTATTGACGTCGATAAGATGGATCAAGATATCGAAACGCGTAAAGCCATTGCTTCAACAACCTTAACAGAAGGTGCCATTGGTTATTACCAATTTCCGGTTCGTCAAGGTGAACGCTTAATGGCTGTCTTACAGACAACTGATAATAAATACCCTCCTTTTGGTGCGGAAGTCACCAATCAAAAAGGGGAAAGTATTGGTATGGTGATGGAAGAAGGCCTTGTTTATATTGCGGGTGTTAACCTTAATGAATCATTAAATGTAATTTGGAACGGTAAAACACAATGTTCAATTACCATTCCCGCGGAAATAACAGATCCCTTAAAACATCAATCGCTCGTTTGTCAGGATCGTTAACAAATAAAATTAATAATGAGAGATAATTAACATGAACTCATTCAGCACAC