Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 37.1 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 32.3 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 32.3 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 37.1 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 32.3 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 37.1 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 32.3 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 37.1 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 37.1 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 32.3 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 29.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 37.1 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 33.3 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 34.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 18.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 28.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 49.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 29.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 39.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 25.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 42.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 0.0 546 37 23 865 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 2.48e-172 524 35 20 873 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.79e-165 506 36 20 845 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 2.12e-163 500 35 19 860 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 1.28e-160 492 37 16 821 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 1.09e-156 483 35 24 867 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P77468 2.38e-155 479 34 21 872 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
Q8XDD1 3.26e-155 479 35 24 867 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P53517 1.27e-130 414 33 28 859 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 1.41e-124 398 32 24 850 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P46005 1.08e-117 380 32 30 884 3 aggC Outer membrane usher protein AggC Escherichia coli
P26949 1.18e-117 380 31 26 847 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 6.46e-111 362 31 22 851 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 6.46e-111 362 31 22 851 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33129 9.54e-111 362 32 25 855 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46000 1.56e-110 361 31 17 840 3 fasD Outer membrane usher protein FasD Escherichia coli
P33388 6.89e-102 337 31 23 820 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33397 8.37e-102 338 30 24 860 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.96e-101 336 30 24 860 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.57e-100 334 30 24 860 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 2.24e-97 325 31 24 801 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
Q8X5K8 2.65e-95 310 39 11 481 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P21647 5.14e-90 306 28 22 800 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P15484 1.01e-88 305 31 17 701 3 None Outer membrane usher protein CS3-2 Escherichia coli
P75750 1.26e-84 291 27 23 841 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P07110 2.58e-82 285 30 30 850 1 papC Outer membrane usher protein PapC Escherichia coli
P33410 5e-82 285 29 24 834 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P76655 8.03e-82 283 28 22 815 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P77196 6.21e-79 276 27 28 866 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 4.08e-77 270 27 28 863 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P53512 4.41e-66 239 26 19 784 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 2.21e-65 237 26 19 783 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 6.17e-65 236 29 33 844 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K7 1.05e-55 199 33 10 366 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q7DBJ9 1.28e-53 194 34 10 367 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.44e-51 187 33 10 367 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P06970 1.87e-44 176 25 28 846 3 faeD Outer membrane usher protein FaeD Escherichia coli
P12050 1.07e-42 170 25 28 756 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 3.73e-31 134 23 33 822 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10255
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 161188 - 163743 (strand: -1)
Length 2556 (nucleotides) / 851 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKCSKFRICLLSSLICWSFYSYSDDYFDPAMLDSQLGIDPTQVDLSQFAKDDSIPTGKFAINIQVNRNNLGDQVITFVPDADGKTVPELTPALLESWGVNIKAISQLNILPPDTVILNLPAYVPDSGIQVNIADLTMKISIPQIAMTDKAEGFIDPSLLDDGIPAMFLSYFVSGSRNRNDTPGGAADTNDTAFATVQSGINLGAWRARSTGSYSRSRVSGNTITDTNFSNTYITRAFHQLRSVLTLGESVSSSDVFDSIPFRGGKLGSDEQMLPASLRGFAPEVSGIATSNARVTVRQNGYVVYQTYVAPGPFSLKDISPSGNTGDLDVTVTEENGTEKTFTIAFSSLPVMLRPGGIKYEVVAGQYDGGITQGSKKSTFASATGIYGLPGNVTLYGGVLAAESYLSAAGGAGISLGVFGALSADITHASAELGGDTGQRKGQSFRLRYSKSMTTTGTSVDLTALRYSTRDYFSFADFNNHDYRLKDGVSPWLNQRQRSSFTTSLSQSLGDYGNLYLSGSIYDFWGSDSEVRQISAGYNGSYKSVSYSLNYSIDRIKSENSWPENRQFSVNISVPFSIFSNNTLVRGISSTYTYSQDNNGRVNQQAGLSGSALDNRFTYGISQSYANKGQGNSGNVYTNYSGSKGTASLGYNYSKDYRSVNGSVGGSLVIHSGGILAGQSLGSSLAIIEAPGADGTHISNQKSVINSGGYGLYPYVSPYNANIISLDVNTLPDNVMLNETTKTVYPTAGAIVKAKFNTKVGYQAIINLKLRNGTMLPFGAVATLADSDTGEENTGIVGDNNQLFMSGLPESGNLYIGWGNGQKQQCRVTFTDIGKLPVSQGQPIRIFDAVCE

Flanking regions ( +/- flanking 50bp)

AGTGATGTCACCTATTGCAATTCCTTATGAAAGATAAAAAGGTACAAGGAATGAAATGCTCAAAATTCAGGATCTGTCTGTTATCCTCACTGATATGTTGGTCTTTTTATTCCTACAGTGACGATTATTTTGATCCGGCTATGTTGGATAGTCAGTTAGGTATAGACCCGACGCAGGTTGACCTCTCACAGTTTGCAAAAGATGACAGTATACCAACGGGTAAATTTGCTATTAATATACAGGTCAACCGGAATAACCTTGGGGATCAGGTGATAACCTTTGTGCCTGACGCTGATGGAAAAACCGTTCCCGAACTCACCCCTGCCCTTCTGGAAAGCTGGGGAGTCAACATTAAAGCAATAAGTCAGCTAAATATTCTGCCGCCGGATACTGTCATTCTGAATTTGCCGGCATATGTCCCGGATTCCGGGATACAGGTAAATATCGCAGATTTAACAATGAAGATCAGTATCCCGCAGATAGCAATGACAGATAAAGCTGAAGGATTTATTGACCCGTCATTACTGGACGACGGGATCCCCGCGATGTTTCTCAGTTACTTCGTCAGCGGCAGCCGGAACCGGAATGATACACCGGGGGGCGCAGCTGATACTAATGATACGGCATTTGCCACTGTTCAGTCCGGTATCAATCTGGGCGCCTGGCGGGCCCGCTCCACGGGTTCTTACAGCCGGAGCCGGGTGTCAGGAAATACGATAACTGATACAAATTTCAGCAATACCTACATCACGCGGGCATTCCATCAGCTCCGCTCAGTTCTTACACTGGGCGAGTCGGTTTCATCTTCTGATGTGTTTGACAGCATTCCGTTCCGGGGCGGAAAACTCGGCTCTGATGAACAAATGCTGCCGGCCAGCCTGCGCGGGTTTGCCCCGGAAGTCAGCGGGATTGCAACGTCCAATGCGCGGGTGACTGTCAGACAGAATGGCTATGTGGTTTATCAGACTTATGTGGCTCCCGGCCCGTTCAGCCTGAAAGATATCTCTCCGTCCGGCAATACCGGTGACCTGGATGTGACCGTTACAGAAGAAAATGGAACGGAGAAAACATTTACCATTGCATTTTCCTCATTACCGGTGATGTTGCGCCCCGGAGGAATTAAGTATGAGGTTGTCGCCGGGCAGTATGATGGCGGAATTACGCAGGGAAGCAAAAAAAGTACCTTTGCCAGTGCCACAGGTATCTACGGTCTGCCGGGCAACGTAACGTTATACGGTGGTGTTCTGGCGGCGGAAAGTTATCTTTCGGCCGCCGGAGGTGCAGGTATTTCACTCGGTGTCTTCGGTGCGCTTTCTGCTGATATCACGCATGCATCAGCGGAACTTGGCGGCGATACCGGCCAGAGAAAGGGACAGTCATTCCGCCTTCGCTATTCGAAGAGTATGACGACCACCGGAACCTCGGTGGATTTGACAGCACTGCGTTATTCGACGCGGGATTATTTCAGTTTTGCTGATTTTAATAACCATGATTACCGGTTAAAAGACGGTGTATCCCCCTGGCTGAACCAGCGTCAGCGCAGCAGCTTTACAACTTCATTATCTCAGTCTCTCGGAGATTACGGTAACCTTTATCTGTCCGGCAGCATTTATGACTTCTGGGGCTCAGACAGCGAAGTGAGACAGATTTCAGCCGGGTATAATGGTTCTTATAAATCAGTAAGTTATTCTCTTAACTACAGTATTGATCGAATCAAATCAGAAAACAGCTGGCCGGAAAACCGGCAGTTTAGTGTGAATATCAGCGTACCGTTCAGTATTTTTTCTAATAACACGCTGGTCCGGGGTATAAGCAGCACTTATACCTACTCACAGGATAATAATGGCCGGGTTAACCAGCAGGCCGGCTTGTCCGGCTCAGCCCTGGATAACCGTTTCACATACGGGATTTCGCAGAGCTATGCCAATAAAGGGCAAGGCAACAGCGGCAATGTGTATACCAACTACTCCGGCAGTAAAGGAACGGCCTCACTCGGGTATAACTACAGTAAAGATTACCGGTCCGTTAACGGGAGTGTGGGAGGAAGTCTGGTGATACATTCAGGCGGAATTCTGGCAGGTCAGAGTCTGGGCAGCAGTCTGGCCATTATCGAGGCACCGGGGGCGGACGGAACACATATCAGTAATCAGAAGAGTGTAATAAATAGCGGAGGTTATGGATTATATCCGTATGTTTCTCCGTACAATGCCAATATTATCAGTCTGGATGTCAATACGTTGCCGGATAATGTGATGCTGAATGAAACCACCAAAACAGTTTACCCGACCGCTGGTGCAATCGTTAAGGCTAAATTTAATACCAAAGTCGGGTATCAGGCTATTATTAACCTGAAACTTCGTAATGGTACGATGCTGCCGTTCGGTGCGGTGGCCACACTGGCGGACAGTGATACCGGTGAAGAAAATACAGGTATTGTCGGTGATAATAACCAGCTGTTTATGAGTGGTTTGCCGGAGTCCGGCAATCTGTATATCGGTTGGGGTAACGGGCAGAAACAACAGTGCCGTGTAACCTTTACTGATATCGGAAAATTACCGGTTTCTCAGGGGCAGCCGATCCGGATATTTGACGCCGTGTGTGAGTAATTCTGCGGGTATCTTATCTGAACAGGTGAGTTCCGGAGCATAGTAATAAA