Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 30.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 25.7 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 27.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 27.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 39.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 34.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 43.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 22.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 39.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 44.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37924 0.0 765 45 11 846 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 763 44 12 868 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P30130 0.0 756 42 10 875 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
Q8XDD1 0.0 722 43 12 847 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 0.0 720 43 11 847 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P46009 0.0 717 41 12 863 3 focD Outer membrane usher protein FocD Escherichia coli
P43662 0.0 635 41 17 853 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 6.69e-173 525 36 13 836 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33408 8.57e-144 449 31 21 879 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P53517 8.09e-143 447 32 18 841 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 2.13e-138 435 31 21 868 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 2.13e-138 435 31 21 868 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 5.24e-135 426 32 20 869 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 8.06e-130 412 33 21 876 3 aggC Outer membrane usher protein AggC Escherichia coli
P33129 7e-126 403 32 23 875 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
Q8X5K8 2.13e-124 387 40 8 520 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45997 1.14e-116 377 31 25 875 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 1.26e-116 377 31 24 873 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 4.06e-115 374 31 23 871 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 7.91e-112 364 30 26 878 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P21647 1.08e-108 356 28 29 888 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33341 9.45e-104 343 29 14 789 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P15484 3.76e-98 330 30 13 763 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33410 1.79e-94 319 28 16 834 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P76655 9.89e-92 310 29 26 849 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53514 2.66e-91 310 29 25 851 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P46000 3.64e-91 309 30 23 853 3 fasD Outer membrane usher protein FasD Escherichia coli
P77196 1.33e-90 309 27 20 862 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 6.9e-85 292 28 26 871 1 papC Outer membrane usher protein PapC Escherichia coli
P53513 1.15e-80 280 27 19 815 3 cssD Outer membrane usher protein CssD Escherichia coli
Q7DBJ9 2.02e-80 267 39 3 374 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P53512 2.61e-80 279 27 20 815 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K7 2.83e-78 261 40 7 342 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P76137 8.25e-78 260 39 3 374 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P75750 4.41e-71 254 27 26 832 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P37868 3.4e-54 205 25 26 842 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 4.57e-45 177 25 27 769 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 7.69e-25 114 24 26 711 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 2.71e-09 64 32 2 134 3 faeD Outer membrane usher protein FaeD Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07095
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1548820 - 1551423 (strand: -1)
Length 2604 (nucleotides) / 867 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MLKSKTICFNLYIFLGTCFSGVVYADSFFNPNLISNIDNEVADLSRFDKGEGQPEGMYSVEIYVNDEYVETKNLIFYESDASSDDTGLLPCIDNKTLTNFGITLTENSKKKSEEVESKDSACENILDKIENSSVKFDFEGQKLFLSIPQIMFKNNVRGFIPPEKWDNGINAFLLNYNFTGRNSKNFKDNVDNNNYFLNLNPGINLGSWRFRNESSWNYASGESKQNKWRNIRTYVQKPIIPLRAELTLGDSFSNGTIFDSLGFRGIKLESDDNMLPDSMRGFAPTIKGIANSNAIVTVKQNGFVIYQISVPPGAFEIKDLYATSSSGNLDVTIKENNGKITQFVVPYSNVPILQREGRLKYELIGGEFRSGADYQDKPNFGQLSLVYGLPYNMTLYGGSQFSNNYQAYAIGLGGNLGTFGAISADVIQANSILPNDEHKKGQSFRLLYAKSINSTGTNFQIMGYRYSTQGYYTLNEVSYKKMAGREIVTDNGIIRDEDNLSNYYNLNYSKKGRFQLNINQQITNNSSLYILGSYQNYWRTTETEQLWQLGYNANIDRINYSLSLSKLKSPGMRGDNKNVAFNISIPLNDVFNQQTVSDLHSSRNSMYAVYSMNRSDDNVWVNQVGLTGTLLEDNNLNYNIQQGYTHNGSGYSGMVYANYKGKYANIGSGYNYSNDWHEFNYSLNGGIVAHAGGITLTQPLGDTNILIKANDANNIKVENANGILTDNNGYAVLPFASTYKNNRVSLDVNSLEENIELENTIINVVPTKGALVEANFKTNIGYRAMVTLSKKDGAIIPFGAMVVDEERSVSGIVGDNGNVFISGLAPVGRLKAKWGKMADQQCIFDYQINEKSSKEKGIYFISSTCQY

Flanking regions ( +/- flanking 50bp)

AACAGATTGGTAAGTAATGCTATAACATTCATTAATGATAAGGCTTTATTATGCTAAAATCTAAAACTATATGTTTTAATTTATATATCTTTTTAGGTACATGCTTTTCTGGTGTGGTGTATGCGGATAGTTTTTTTAATCCTAACTTAATTTCAAATATTGATAATGAAGTAGCAGATTTATCTCGATTTGATAAAGGTGAAGGCCAACCTGAAGGAATGTATTCAGTAGAAATTTATGTAAACGATGAATATGTTGAAACAAAAAATTTAATATTTTATGAAAGCGATGCATCATCCGATGATACAGGTTTATTACCTTGTATAGATAATAAAACTTTGACAAATTTTGGAATAACTTTAACTGAAAATAGCAAAAAGAAATCAGAAGAGGTAGAAAGTAAAGATAGTGCTTGTGAGAATATTTTAGATAAAATAGAAAACTCAAGTGTTAAATTCGATTTTGAAGGACAAAAATTATTTTTAAGTATTCCACAAATAATGTTTAAAAATAATGTTCGTGGCTTTATCCCACCTGAAAAATGGGATAATGGGATTAATGCGTTTTTACTAAATTATAATTTCACAGGAAGAAATAGTAAGAACTTTAAGGATAACGTTGATAATAATAATTATTTTTTAAACTTAAATCCTGGTATTAATCTTGGTTCATGGCGATTTAGAAATGAAAGTTCATGGAACTATGCCAGTGGTGAAAGTAAGCAAAATAAATGGAGGAATATAAGAACATATGTACAAAAACCTATTATTCCATTACGTGCTGAATTAACCCTTGGTGACTCTTTTTCTAATGGAACCATTTTTGATAGTCTTGGTTTTAGAGGGATTAAGCTAGAATCTGATGATAATATGTTGCCTGATAGCATGAGAGGATTTGCACCTACGATAAAGGGTATTGCGAATAGCAATGCTATTGTTACAGTCAAGCAGAATGGTTTTGTTATTTATCAAATTTCTGTACCTCCAGGTGCATTTGAAATAAAAGATCTCTATGCCACATCAAGTAGCGGTAATTTAGATGTCACAATCAAAGAGAATAACGGTAAAATTACACAATTTGTTGTACCTTATTCAAATGTGCCTATTTTACAACGTGAAGGACGCTTAAAATACGAATTGATTGGAGGGGAATTTCGTAGCGGAGCAGATTATCAAGATAAACCTAATTTTGGTCAATTAAGTTTAGTATATGGCTTACCTTATAATATGACGTTATATGGAGGAAGCCAATTTTCAAATAATTATCAAGCCTATGCGATTGGTTTAGGTGGTAATCTAGGCACCTTTGGGGCGATATCAGCAGATGTAATACAGGCGAATAGTATATTGCCAAACGATGAGCATAAAAAAGGGCAGTCATTCCGATTACTTTATGCTAAATCGATTAATAGCACAGGCACTAACTTTCAAATAATGGGGTATCGATATTCAACGCAAGGCTACTATACCCTAAATGAAGTTAGTTATAAAAAAATGGCAGGGCGTGAAATAGTAACAGATAATGGAATAATAAGAGATGAGGATAACTTATCTAACTACTATAATTTAAATTATTCTAAAAAAGGGAGGTTTCAACTTAATATAAATCAGCAAATTACCAATAATAGTTCTTTGTATATTTTAGGCTCTTACCAAAACTATTGGCGCACAACTGAAACTGAACAGTTATGGCAACTGGGTTATAATGCTAATATTGATAGGATAAATTATAGTCTTAGTTTATCGAAATTAAAATCACCGGGTATGCGTGGTGATAATAAAAATGTAGCTTTTAATATATCAATTCCTCTTAATGATGTATTTAACCAACAAACTGTAAGTGACTTACATTCAAGTAGAAATAGTATGTATGCTGTTTACTCAATGAATAGAAGCGATGACAATGTTTGGGTCAATCAAGTGGGACTAACAGGAACTCTCCTTGAAGACAATAATTTAAATTATAATATTCAACAAGGATATACGCATAATGGTTCTGGTTATTCAGGAATGGTTTATGCTAATTATAAAGGTAAATATGCTAATATAGGTAGCGGATATAATTATAGTAATGATTGGCATGAGTTTAATTATAGTTTAAATGGTGGTATTGTTGCTCATGCAGGAGGTATTACTTTAACTCAACCTTTAGGGGATACCAATATTCTTATTAAAGCAAATGATGCTAATAATATTAAAGTAGAAAATGCAAATGGTATATTAACTGATAATAATGGTTATGCTGTCTTACCGTTTGCTTCAACATATAAAAATAATCGAGTTTCATTAGATGTTAATTCATTAGAAGAAAATATTGAATTAGAAAATACGATTATTAATGTAGTTCCTACTAAAGGGGCATTGGTTGAAGCTAATTTTAAAACGAATATTGGCTATCGAGCAATGGTTACATTAAGCAAAAAAGATGGCGCTATTATACCTTTCGGTGCGATGGTTGTTGATGAAGAGCGTTCCGTAAGTGGTATTGTTGGCGATAATGGGAATGTTTTTATCTCTGGTTTAGCACCTGTTGGTAGGCTAAAAGCAAAATGGGGAAAAATGGCTGATCAACAATGTATATTTGATTACCAAATTAATGAGAAGTCATCAAAAGAAAAAGGTATCTATTTTATTTCTTCCACATGCCAATATTAAAAACAAGCATATTTACGGATTTTATTATGATTAGAATAGTATTGTTTACA