Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 45.8 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 45.2 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 35.7 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 45.2 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 45.8 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 35.7 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 45.2 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 45.8 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 35.7 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 45.8 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 45.2 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 35.7 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 45.8 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 45.2 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 35.7 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 36.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 44.7 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 44.7 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 42.1 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 43.2 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 41.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 38.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07110 0.0 937 55 4 825 1 papC Outer membrane usher protein PapC Escherichia coli
P77196 0.0 677 42 13 829 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 0.0 613 38 13 833 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 2.29e-164 501 34 18 832 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 3.08e-160 490 34 14 812 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 2.67e-82 285 28 25 853 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 2.33e-81 283 27 26 861 3 focD Outer membrane usher protein FocD Escherichia coli
P33129 2.79e-80 280 27 21 845 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P42915 2.17e-79 276 28 23 806 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 2.6e-74 263 27 27 820 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 1.2e-73 261 28 24 822 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P77468 7.27e-73 259 27 27 866 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33408 1.12e-71 255 26 21 795 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P37924 8.41e-71 253 25 24 870 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53517 4.1e-70 251 26 25 865 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 2.89e-67 243 27 26 851 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 2.89e-67 243 27 26 851 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P43662 2.17e-65 238 27 23 785 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P26949 2.85e-64 234 27 23 828 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33388 8.18e-61 224 25 29 848 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 3.16e-58 217 26 25 872 3 aggC Outer membrane usher protein AggC Escherichia coli
P33397 4.11e-58 216 26 27 808 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 2.38e-57 214 26 27 808 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 4.64e-57 213 26 25 802 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P53513 9.3e-51 194 24 29 798 3 cssD Outer membrane usher protein CssD Escherichia coli
P33341 4.76e-50 192 23 24 839 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P46000 2.07e-48 188 27 24 731 3 fasD Outer membrane usher protein FasD Escherichia coli
P53512 2.75e-48 187 24 30 798 3 cssD Outer membrane usher protein CssD Escherichia coli
P21647 8.97e-48 186 24 23 801 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P15484 5.08e-43 172 26 23 673 3 None Outer membrane usher protein CS3-2 Escherichia coli
P37868 1.75e-42 170 23 24 845 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 8.77e-42 167 25 26 775 3 fanD Outer membrane usher protein FanD Escherichia coli
P33410 1.71e-37 154 23 27 847 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P45420 1.6e-34 145 24 34 821 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 1.41e-29 129 27 15 434 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 4.86e-28 122 24 15 485 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q8X5K7 2.65e-24 108 27 8 318 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q7DBJ9 1.28e-13 77 26 15 345 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.81e-13 75 24 15 358 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10945
Feature type CDS
Gene -
Product PapC/FimD family outer membrane usher protein
Location 2408787 - 2411285 (strand: -1)
Length 2499 (nucleotides) / 832 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MSGRSTSILATILFIIYSQNVYSVEFNLDVVDSKSKDNINFARFSEAGYILPGKYQLNLVLNGQGIGSSTYTVNVLERENKSQDENKKLLSQACLTGDIISSLGLKEKIENNLPTWNDGKCIDLLSLDGVEVTTKLNEGILSIKIPQIWLEYTSATWLPPSRWDDGISGLILDYNINTNVNIPHEGSNTQSIYYNGTVGYNFGSWRIRSDYQGNYNRTSGDAENNKDLLNFTRVYGYRAIRSLKSNLTIGENFINSNIFNSWRYTGISLESDDRMLSPQLRGYAPQVTGIAETNARVVVKHQGRILYDSTVPAGPFAIQDLDSSVRGKLDVEIIEQNGKTNKFQIDTAYVPYLTRPGQVRYKVVAGRSRDKLHNTEGPIFGTTEAAFGLSNAWTMYGGTIFAGDYNSVALGVGRDMFAFGAVSADITQSYARLPDRGTMQGKSWRVSYSKRFDNLDADVTFAGYRFNERNYMTMQNYLDARYRDDFTGKEKELYTVTFNKGLSEYNTSIGVQYNHQTYWDQSNSDYYSINLNKYMDVFAVKNISLNLSASRSKYYGKDNDVFFARVSIPLENNRGFINYDGSRNSGNYTHNIGYFNTTEDNLANYNLNVSTTYGDDMDSSSSFSGYYGRYTSIANINANATISNKNTSSFGFSANGGLTITAKGAALHPDGFNGGTRLLVDTEGVAGVPVDGGRVTTNNWGYGVVTDINSYYRNETTIDLTKLPNNIEATQAIVESSLTEGAIGYRKFEVLKGEKAFAIIRLADNSYPPFGSIISNAKGRELGIISDDGFAWLTGINPNEEIRVSWGAEQQCVAKLPNKIEPSNKILLLCEK

Flanking regions ( +/- flanking 50bp)

CTTTAAGACTTAAATAATTAAGGTTATTAGCCAATATGAACAGAGAGAATATGAGTGGAAGATCTACAAGCATTTTGGCAACTATATTATTTATAATTTATTCTCAAAATGTATATTCTGTAGAGTTTAACTTAGATGTTGTTGACTCTAAATCTAAAGATAATATTAACTTTGCTAGGTTTAGTGAAGCCGGTTATATTTTACCGGGTAAATATCAGCTTAACTTAGTACTTAATGGACAAGGGATCGGTTCATCAACATATACTGTTAACGTATTAGAAAGAGAAAATAAATCTCAAGATGAAAATAAAAAACTGTTATCTCAAGCCTGTTTAACAGGTGATATTATTTCATCTTTAGGATTAAAGGAAAAAATAGAAAATAATCTACCAACATGGAATGATGGAAAATGTATTGACTTATTAAGCCTAGATGGTGTTGAAGTTACAACAAAATTAAATGAAGGTATATTATCAATTAAAATACCTCAAATATGGCTTGAGTATACAAGTGCTACTTGGTTACCACCATCTCGCTGGGATGATGGGATCTCAGGTTTGATCCTTGATTATAATATTAACACCAATGTTAATATCCCTCATGAAGGAAGCAATACGCAAAGTATTTATTACAATGGTACTGTTGGTTATAACTTCGGTAGCTGGCGTATTCGTTCTGATTATCAAGGGAATTATAATCGAACCTCTGGTGATGCGGAAAACAATAAAGATTTATTAAATTTTACTCGAGTTTATGGATATCGCGCGATCCGCAGTTTAAAGTCTAACCTAACCATCGGTGAAAACTTTATAAACTCCAATATATTTAATTCCTGGCGTTATACGGGGATTAGTTTAGAAAGTGATGATCGGATGCTCTCTCCTCAACTAAGGGGATATGCACCACAAGTTACAGGGATCGCTGAAACTAACGCAAGGGTAGTTGTTAAGCATCAAGGACGTATTCTTTACGATTCAACAGTACCCGCAGGTCCATTTGCCATTCAAGATTTAGACAGTTCGGTGCGTGGTAAATTGGATGTTGAGATTATTGAGCAAAATGGAAAGACGAATAAATTTCAAATTGATACAGCCTATGTTCCTTATTTAACAAGACCGGGACAAGTTCGTTATAAGGTTGTTGCAGGACGCTCTAGAGATAAATTACATAATACAGAAGGACCTATATTTGGTACGACTGAAGCTGCTTTTGGTTTAAGTAATGCTTGGACTATGTATGGTGGTACCATTTTCGCCGGTGATTATAATAGTGTAGCACTTGGGGTTGGGCGCGATATGTTCGCTTTCGGTGCGGTATCTGCCGATATTACACAATCTTATGCTCGATTACCTGATCGTGGCACTATGCAAGGTAAGTCATGGCGAGTCAGTTACTCTAAACGTTTTGATAATTTGGATGCGGATGTAACCTTCGCTGGATACCGATTTAATGAACGTAATTATATGACGATGCAAAATTATTTAGATGCACGTTATCGTGATGATTTTACTGGAAAAGAGAAAGAACTCTATACAGTAACCTTTAATAAAGGTCTTTCTGAATATAACACATCAATTGGGGTGCAATATAATCATCAGACATATTGGGATCAAAGTAATTCCGATTATTATTCTATTAACTTAAATAAATATATGGATGTTTTTGCAGTTAAAAATATTTCATTAAATTTATCTGCATCGAGATCTAAATACTATGGCAAAGATAATGATGTCTTCTTTGCAAGAGTCAGTATTCCATTAGAGAATAATAGAGGATTTATAAATTATGATGGCTCAAGAAATTCGGGGAACTATACGCATAATATAGGGTACTTTAATACCACTGAAGATAACTTAGCTAATTATAATTTAAATGTTTCAACGACATATGGCGATGATATGGATAGTAGTTCAAGCTTCTCTGGCTATTATGGACGCTATACTTCAATCGCTAATATTAATGCGAATGCCACTATCTCAAATAAAAATACCTCATCATTTGGTTTTTCTGCTAATGGGGGCTTAACGATTACCGCTAAAGGAGCAGCACTTCACCCAGATGGATTTAATGGTGGTACTCGCTTATTAGTTGATACTGAAGGTGTTGCAGGAGTACCAGTTGATGGTGGCCGTGTAACAACCAATAATTGGGGTTATGGTGTTGTTACCGATATTAATAGTTATTATCGCAATGAAACAACGATCGATTTAACTAAATTACCTAATAATATAGAAGCGACACAGGCGATTGTAGAATCTTCATTAACTGAAGGTGCTATTGGTTATAGAAAATTTGAAGTGTTAAAAGGTGAGAAGGCCTTTGCAATAATTAGGTTAGCTGATAACTCTTATCCACCATTTGGTTCAATAATTAGTAATGCTAAAGGACGAGAGCTAGGAATAATTAGTGATGATGGTTTTGCTTGGCTAACAGGTATTAACCCAAATGAAGAAATTAGAGTATCTTGGGGAGCTGAACAACAATGTGTCGCTAAACTTCCAAATAAAATAGAACCGAGTAATAAGATATTATTATTGTGTGAAAAATAAATATCGGTAATTAATAAACGACAAAGGTCTTGAAATGAAAAAAATATCAT