Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 30.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 26.4 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 23.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 25.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 43.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 40.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 36.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 21.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 39.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 43.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30130 0.0 768 45 9 853 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 0.0 761 44 9 848 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 750 44 9 848 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 0.0 742 45 9 851 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 737 44 8 843 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P46009 0.0 708 44 13 830 3 focD Outer membrane usher protein FocD Escherichia coli
P43662 0.0 686 42 13 850 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 0.0 569 38 13 844 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
Q56983 4.39e-134 423 32 27 862 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 4.39e-134 423 32 27 862 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53517 1.1e-132 420 32 21 831 3 afaC Outer membrane usher protein AfaC Escherichia coli
P26949 4.85e-131 415 32 18 823 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 2.12e-128 408 32 22 812 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q8X5K8 9.67e-128 395 41 7 508 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P46005 3.24e-127 405 31 22 843 3 aggC Outer membrane usher protein AggC Escherichia coli
P33388 7.25e-119 382 31 15 782 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P45998 1.95e-117 379 30 18 838 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 5.56e-117 378 30 18 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 3.2e-116 376 30 17 836 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 1.61e-115 375 31 25 847 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33341 1.7e-111 363 31 12 763 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P21647 4.48e-98 327 29 21 821 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P15484 2.41e-96 325 30 17 745 3 None Outer membrane usher protein CS3-2 Escherichia coli
P77196 9.28e-96 322 29 28 876 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P33410 4.06e-95 320 28 17 842 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P53514 9.12e-95 318 30 28 858 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
Q8X5K7 1.87e-94 303 43 6 353 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P53512 4.63e-93 313 29 16 814 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 4.92e-92 310 28 18 835 3 cssD Outer membrane usher protein CssD Escherichia coli
P76655 5.12e-92 311 30 20 815 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P46000 6.45e-89 303 27 23 840 3 fasD Outer membrane usher protein FasD Escherichia coli
Q7DBJ9 8.48e-84 276 38 3 382 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P07110 1.1e-83 288 29 29 858 1 papC Outer membrane usher protein PapC Escherichia coli
P76137 2.48e-81 269 38 4 383 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P75750 2.23e-76 268 27 27 841 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P12050 4.22e-60 221 26 23 760 3 fanD Outer membrane usher protein FanD Escherichia coli
P37868 5.84e-58 216 24 21 791 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P06970 2.66e-43 172 24 28 832 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.52e-22 107 28 12 356 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P45420 4.21e-18 93 34 8 197 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13455
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 2980466 - 2982997 (strand: 1)
Length 2532 (nucleotides) / 843 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MVNKNTNKDIVYFLFPSVIALSLTLSFSSYSANRFNPAFLADSPDAVTDLSYFEAGNRIKPGDYLLDIVFNHEYLRSENIHFISQDNHVIPCLNRDYYQSLGINIKLFADFEKFSANECIDIEKIIPDSVVNYDIEKQALNIQVPQAALDLKARGYIPPEKWDNGITAGILNYTFSGANSWGNSHNNSYYLNLRSGINIGAWRLRDYSTWNSSNGKNQWNHINTYLQRNIVSLRSQLQIGDSYTSSTLFDSVNFRGISLESDDTMLPDSQRGFAPVVRGIAKGNAKVVIRQNGYVIYQTFVSPGAFEIRDLYPTSNSGDLYVTIEENDGSKHSYVVPYSAVPILQREGQKQFVIQAGEIRQNNQHKKPRFIQGHLIYGLPYDTTVYGGALATKDYQSYALGAGKNMGTLGAFSTDITFAHSQLPNNSTSDGYSLRFLYAKSLNQFGTNFQLLGYRYSTSGFYTLDETLNTRMSGYLYEDNQKKPLSYFNLHNRKKGSLQINLSQQLGDYGSIFMMTNWQNYWGTNEKNVLVQTGYNGNIKGLSYNVIYSYNRMMNSGQRDQTLSVGLSIPLQLLMPTSYQSINSTYLTYNYSHNNNGYSTHNAGIAGTLLEDNTLNYSVQQGYSNQGGNYTGSAALGYQSRYGNLNASYNYHQDAQQINYSLAGGMLLHSGGLTLSQPLSANAILVDARNTADVPIDNATGVYTDWRGFAVIPYATAYRQNRVALDTTALPDNVEIEQNIKQVIPTQGAVIKVQFDAKKGYRLLLTLQHQGRPLPFGAIATDKQNHLSGIVGDDGLLYLSGVPDSGKLEIRWGHNASQYCQVNYQLPASQLDEPFVKMTQECQ

Flanking regions ( +/- flanking 50bp)

AAATCGTTCATTAATCACAGCATCTTTTTCAACCCTGTTGGTCAAAAACCATGGTTAATAAGAATACTAATAAAGATATCGTTTATTTTCTCTTTCCAAGTGTCATTGCATTGTCATTGACGCTGTCCTTTTCATCATATAGCGCAAACCGATTTAATCCTGCATTTTTGGCTGACTCTCCTGATGCCGTCACCGATTTAAGTTATTTTGAAGCAGGCAACCGCATTAAACCCGGTGATTATCTTCTTGATATTGTTTTTAATCATGAGTATCTGCGTAGTGAAAATATTCATTTTATTAGTCAAGATAACCATGTTATTCCTTGTTTAAATCGAGATTATTATCAATCACTCGGGATCAATATTAAACTATTTGCTGATTTTGAGAAATTCTCGGCAAATGAATGTATTGATATTGAAAAAATCATTCCAGATTCTGTTGTTAATTATGATATTGAGAAACAAGCTTTAAATATTCAAGTCCCTCAAGCCGCGTTAGATTTGAAAGCACGCGGTTATATTCCACCAGAAAAATGGGATAACGGTATAACAGCAGGTATTTTAAACTACACCTTTAGTGGCGCTAATAGCTGGGGAAATTCTCATAATAATAGCTACTACTTAAATCTACGTAGTGGGATCAATATTGGTGCTTGGCGATTACGCGATTATTCCACTTGGAATTCGTCAAACGGGAAAAACCAATGGAACCATATCAATACCTATCTGCAACGCAATATTGTGTCATTAAGAAGCCAATTACAAATTGGTGATAGTTATACCTCATCAACACTTTTTGACAGTGTTAATTTTCGAGGTATTTCATTAGAAAGTGACGACACTATGCTACCTGATAGCCAAAGAGGATTTGCACCTGTAGTCAGAGGTATTGCTAAAGGCAATGCTAAAGTGGTGATCCGCCAAAACGGTTATGTGATTTATCAAACCTTTGTTTCTCCGGGTGCTTTTGAAATCCGTGATCTCTATCCAACGTCAAATAGTGGCGACCTCTATGTCACCATTGAAGAAAATGATGGTAGCAAACACAGCTATGTTGTGCCTTATTCTGCTGTACCTATTTTACAGCGAGAAGGCCAAAAACAGTTTGTCATCCAAGCCGGTGAAATACGCCAAAATAACCAACATAAAAAACCTCGCTTTATACAAGGTCATCTTATTTATGGCTTACCCTATGACACCACTGTCTATGGTGGTGCATTAGCAACAAAAGATTACCAATCTTATGCCCTAGGAGCAGGTAAAAATATGGGTACCCTAGGTGCCTTCTCTACCGATATCACCTTTGCTCATAGCCAATTGCCAAATAACTCAACATCAGATGGTTATTCTTTACGTTTTCTTTATGCCAAGTCGTTAAACCAATTTGGCACAAACTTTCAATTGCTCGGTTATCGTTACTCTACTTCGGGTTTTTACACATTAGATGAGACATTAAATACGCGTATGTCCGGTTATCTGTATGAAGATAATCAAAAAAAACCGTTGAGTTATTTTAATTTGCATAATCGCAAGAAAGGGAGCCTACAAATTAATTTATCACAACAACTGGGGGATTATGGCTCTATTTTTATGATGACCAACTGGCAAAATTATTGGGGAACTAATGAGAAAAATGTCCTAGTACAAACCGGCTACAATGGCAATATTAAAGGGCTCTCTTATAACGTCATTTATAGTTATAACAGAATGATGAATAGTGGTCAGCGTGACCAAACATTGTCTGTGGGTCTTTCTATCCCATTACAATTGCTAATGCCGACAAGTTATCAATCCATCAATAGCACTTATCTCACATATAATTACAGCCACAATAATAACGGTTACTCGACACATAATGCGGGGATTGCTGGTACATTATTGGAAGACAATACCCTTAATTACAGTGTTCAACAAGGTTATAGCAATCAAGGCGGAAACTATACCGGTAGTGCGGCGTTGGGTTATCAAAGTCGCTATGGCAATTTAAATGCTAGCTATAACTATCATCAAGATGCTCAACAAATTAACTATAGCCTCGCTGGAGGTATGCTACTCCATAGTGGCGGATTAACCTTAAGCCAACCCTTAAGCGCTAATGCCATTTTAGTAGATGCTCGTAATACTGCGGATGTACCGATTGATAATGCGACAGGGGTTTATACTGACTGGCGAGGGTTTGCCGTTATTCCCTATGCTACCGCTTATCGACAAAATCGAGTGGCATTAGACACCACCGCATTACCCGATAATGTTGAAATTGAGCAAAACATTAAGCAGGTGATCCCAACACAAGGCGCCGTCATTAAAGTTCAGTTTGATGCTAAAAAAGGGTATCGCTTATTACTGACGCTACAACACCAAGGTCGCCCACTCCCTTTTGGGGCAATAGCAACTGATAAACAAAATCATCTGTCCGGTATTGTTGGCGATGATGGCTTACTCTACTTATCGGGTGTCCCTGATTCAGGAAAATTAGAGATCCGCTGGGGGCATAATGCCTCTCAATACTGTCAAGTGAACTATCAATTACCCGCCTCTCAACTTGATGAACCTTTTGTGAAAATGACACAGGAGTGCCAATAATGCACAAATTAATGCTTATTGTAGCGTTGTCATTACTGTTTACCACTAAG