Homologs in group_136

Help

10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 31.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 25.7 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 26.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 39.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 37.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 33.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 39.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 21.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 37.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75857 0.0 557 38 9 797 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P43662 0.0 554 38 17 838 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 0.0 553 38 10 832 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
Q8XDD1 0.0 551 38 9 785 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P46009 1.59e-180 545 36 15 857 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 9.53e-177 535 36 10 808 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P37924 2.98e-176 533 35 13 859 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 3.19e-170 518 35 12 830 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 1.48e-133 422 31 19 834 3 afaC Outer membrane usher protein AfaC Escherichia coli
P26949 1.37e-126 403 32 18 782 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 2.95e-126 402 32 18 785 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P46005 1.8e-125 400 34 20 790 3 aggC Outer membrane usher protein AggC Escherichia coli
Q56983 1.83e-121 389 32 17 787 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.83e-121 389 32 17 787 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33397 3.51e-117 378 31 25 876 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 6.52e-117 377 32 20 804 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.05e-116 377 32 25 876 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 1.57e-115 373 31 19 789 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33129 6.19e-108 354 31 22 808 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46000 8.27e-104 343 30 22 827 3 fasD Outer membrane usher protein FasD Escherichia coli
P21647 1.27e-97 326 29 22 795 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33341 1.72e-95 320 28 19 827 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P15484 1.89e-89 306 29 10 687 3 None Outer membrane usher protein CS3-2 Escherichia coli
Q8X5K8 2.09e-89 294 35 6 481 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33410 1.01e-83 289 27 17 812 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P76655 3.69e-78 273 29 24 783 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 6.45e-77 269 29 26 812 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P53512 1.97e-73 260 26 15 772 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 1.71e-71 254 25 16 773 3 cssD Outer membrane usher protein CssD Escherichia coli
P77196 5.24e-68 246 27 33 879 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K7 1.4e-67 232 37 9 362 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P53514 1.76e-66 240 28 37 827 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P07110 4.82e-64 234 28 33 839 1 papC Outer membrane usher protein PapC Escherichia coli
P37868 1.2e-53 203 25 19 687 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 1.51e-50 185 32 4 340 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 8.24e-49 180 32 4 340 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P06970 1.63e-47 185 25 27 846 3 faeD Outer membrane usher protein FaeD Escherichia coli
P12050 1.24e-42 170 24 26 738 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 3.71e-40 162 26 22 644 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16660
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 3672004 - 3674529 (strand: -1)
Length 2526 (nucleotides) / 841 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MTFSMIAVSTKRLPINMADNLYRRGVLAIAITTVLFPYTVLAEDIFNPEALNLGIENHVADINSLNYLSYAGGQLPGVYSVDIYLNDKLIDNRQIRFIFDDDKKVLAPEISKQDLLNWGVKGSVTDAFSQQPDSSKITDIARVIPNATYKYDFSRARLSFSIPQIALYNYGQGYISPTEWNDGINAAFINYTYRQNKYWYRDQKDSDNIFLGLRSGINLGAWRVRNHSTYNKNSDNAAEWNSLQTYVERDIRRLKSRLTLGETASSNDVLESVPYRGIKLASDESMLPQSQRGFAPVVRGIAQSNAMVTIRQNNSVIYQTSVPPGEFEISDLYPTSYSGDLQVTVEEADGSKRTFSQPFSAVPMMQRAGNLKYSLDLGKYNADSAERKPTFLQASAIYGLPYNFSLYGGTLLSADYQAYAIGAGVNMGYLGAISADITHANTTLIDNHKAQGQSYRVQYSKYLPDTKTGFSLASYRYSTKDYYDFSTTNERFSQLYRKKKQFQISVSQALGELGYLSLNGYQQYYWYQDRVDRNINLSFNSNYRSLSYSISYAYNKRQESELTDQILSINFNLPFNMTSNNNWLSYRYNTSKQGDSISSVSLSGTRLEDNNLQYDISQNYNHTRQEYSGAINGSYSASGGEISAGYNYDKRFQSVNWGATGALLIHQDGITPSRTIYDSAILIKAEDIDHLKISSAQSLYTNAQGYAVIPNVSRYERNRVTVDPASLKGNNDVELTSTTVIPTKGAIVLADFKARKGARVLVNLSYNGKPLPFGSQVEISQDGQVISSGIVANDGEVFLNGVPASSQLQAKWGNSATEQCQATLNADLSLEKIQFLQLDCR

Flanking regions ( +/- flanking 50bp)

ATGATTACGGTGCGACTGTAGATAAAGTATTAAATTAAGAGTATACGGCGATGACTTTTTCTATGATAGCAGTATCTACAAAACGATTACCCATCAACATGGCAGATAATCTTTATCGTCGTGGAGTGTTAGCTATTGCTATCACGACTGTTTTATTCCCTTATACTGTTCTTGCTGAAGATATTTTTAATCCTGAAGCACTTAATTTAGGTATCGAAAATCACGTTGCAGATATTAACAGTCTGAATTACCTGTCCTATGCAGGAGGACAACTTCCTGGTGTCTATTCTGTCGATATTTATCTTAACGATAAACTTATCGATAATCGTCAAATTCGTTTTATTTTTGATGACGATAAAAAAGTGCTGGCACCTGAAATCAGTAAACAGGATTTACTCAATTGGGGAGTCAAAGGGTCCGTTACAGACGCGTTTAGCCAACAACCTGATAGTAGTAAAATAACGGATATTGCTCGTGTTATTCCTAATGCTACATATAAATATGATTTTTCACGTGCGCGATTATCATTTTCGATCCCACAAATTGCATTATATAACTATGGGCAAGGTTATATATCCCCCACAGAATGGAATGATGGGATTAATGCAGCCTTTATTAATTACACCTATCGTCAGAATAAATATTGGTATCGAGACCAAAAAGACAGTGACAATATCTTTTTAGGATTACGCAGTGGTATTAATCTAGGCGCTTGGCGTGTACGTAATCACAGCACTTACAACAAAAATAGTGATAACGCCGCAGAATGGAACAGTCTACAAACTTACGTTGAACGCGATATCCGCCGTTTAAAAAGTCGATTAACACTAGGTGAAACCGCATCAAGTAATGATGTGTTAGAAAGTGTTCCTTATCGTGGTATTAAATTAGCCTCAGATGAAAGCATGTTGCCACAAAGTCAGCGTGGCTTTGCTCCTGTTGTAAGAGGAATTGCACAAAGCAACGCAATGGTGACTATTCGCCAAAATAATAGTGTTATTTATCAAACCTCTGTTCCCCCCGGTGAATTTGAAATATCAGATCTCTACCCCACCTCTTATAGTGGTGATTTACAAGTAACTGTTGAAGAAGCTGATGGAAGCAAACGTACATTTTCCCAACCCTTCTCTGCAGTCCCCATGATGCAACGAGCTGGGAACTTAAAATATAGTCTCGACTTGGGGAAATATAATGCTGATAGCGCAGAGCGAAAACCGACCTTTTTACAAGCTTCTGCCATTTACGGCTTACCTTATAATTTTTCCCTTTATGGAGGTACGCTGCTTTCAGCAGATTATCAAGCTTATGCGATAGGTGCCGGCGTAAATATGGGTTATTTAGGGGCGATTTCAGCCGATATAACTCATGCAAATACCACACTTATCGATAACCATAAAGCACAAGGGCAATCTTATCGTGTCCAGTATTCAAAATATTTACCGGATACCAAAACAGGATTTTCATTAGCGTCTTATCGCTACTCAACTAAAGATTATTATGATTTTTCAACCACGAATGAACGTTTTTCACAGCTTTATCGTAAGAAAAAACAGTTTCAGATCTCAGTATCGCAAGCATTAGGAGAGCTTGGTTACCTCTCTTTAAATGGTTATCAGCAATACTATTGGTATCAAGATAGAGTCGATCGCAATATCAACCTAAGCTTTAACTCTAATTATCGCTCACTCAGTTATAGTATTTCTTATGCCTATAATAAACGGCAAGAAAGCGAATTAACCGATCAAATTTTATCGATTAACTTTAACCTGCCGTTCAATATGACCAGCAATAACAATTGGTTAAGTTATCGTTATAACACCAGTAAACAAGGTGATTCGATAAGTTCTGTAAGTTTAAGTGGTACTCGTCTCGAAGATAACAATCTTCAGTATGATATTTCGCAAAACTATAACCATACTCGCCAAGAATATAGCGGTGCTATCAATGGTAGTTATAGTGCTTCGGGCGGCGAAATCAGTGCTGGTTATAACTATGATAAACGTTTCCAGTCAGTGAATTGGGGAGCAACTGGCGCGTTATTAATCCATCAAGATGGAATAACCCCATCTCGCACTATCTATGACTCCGCTATTTTAATCAAAGCGGAAGATATTGATCATTTGAAAATTAGCAGTGCACAAAGTTTATATACCAATGCTCAAGGTTATGCCGTTATCCCTAACGTTTCCCGTTATGAACGCAATAGAGTAACGGTTGATCCCGCTTCCTTAAAGGGAAACAACGATGTGGAACTCACTTCAACAACAGTGATCCCAACGAAAGGCGCGATTGTTTTAGCCGATTTTAAAGCTCGCAAGGGTGCAAGAGTATTAGTGAACCTCTCTTATAACGGTAAACCTTTACCATTCGGTAGCCAAGTTGAAATTAGCCAAGATGGACAAGTGATTTCCAGTGGGATTGTGGCTAATGATGGTGAGGTTTTCCTAAATGGTGTACCTGCAAGTAGTCAACTACAAGCCAAATGGGGGAATAGTGCTACCGAACAGTGCCAAGCAACATTAAACGCCGATCTATCGCTCGAGAAAATTCAATTTTTACAACTGGACTGCAGATAGGTGATAAATATGAATAAATATATAACTTTGGGTTGTCTGTCTGCACTTTT