Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 28.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 25.0 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 25.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 44.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 39.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 31.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 43.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 22.2 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 37.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30130 0.0 959 52 7 860 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 0.0 822 45 7 863 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 0.0 715 43 11 860 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75857 0.0 706 41 9 865 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 698 41 9 865 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P77468 0.0 673 41 13 862 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 0.0 594 39 17 851 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 1.89e-168 513 35 14 844 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 1.69e-148 462 32 18 865 3 afaC Outer membrane usher protein AfaC Escherichia coli
P46005 1.46e-133 422 33 20 860 3 aggC Outer membrane usher protein AggC Escherichia coli
Q56983 1.5e-130 414 33 21 869 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.5e-130 414 33 21 869 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 1.12e-127 407 31 23 857 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 3.2e-127 405 32 17 829 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P33388 2.63e-123 395 31 19 861 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33129 1.37e-121 392 32 25 863 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
Q8X5K8 1.32e-113 358 38 9 516 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33397 2.16e-109 358 30 21 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 2.77e-108 355 30 21 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 4.05e-107 352 30 21 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
Q7DBJ9 4.35e-103 327 44 2 361 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P33341 8.41e-101 335 27 15 808 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P76137 3.55e-100 320 45 2 361 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P33410 4.71e-99 332 30 22 806 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P46000 1.77e-95 321 29 26 875 3 fasD Outer membrane usher protein FasD Escherichia coli
P21647 2.22e-94 318 27 24 848 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P53514 1.76e-93 315 29 27 859 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P15484 1.01e-92 316 30 15 730 3 None Outer membrane usher protein CS3-2 Escherichia coli
P76655 5.31e-84 290 28 27 825 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P77196 5.37e-84 291 26 25 885 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53512 1.4e-82 286 28 19 792 3 cssD Outer membrane usher protein CssD Escherichia coli
P75750 1.08e-78 275 28 28 873 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P07110 8.71e-78 273 28 27 866 1 papC Outer membrane usher protein PapC Escherichia coli
P53513 2.59e-77 271 28 21 792 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K7 3.1e-68 234 39 10 352 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P37868 8.59e-65 236 26 23 797 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 2.13e-50 194 26 28 774 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 5.04e-34 144 25 29 708 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 1.02e-33 143 25 35 834 3 faeD Outer membrane usher protein FaeD Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17130
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 3767793 - 3770414 (strand: 1)
Length 2622 (nucleotides) / 873 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MSFSTGINSLSGIKINNVKLFIFILALLFSVDSKSEEEFYYNPYFLSDNPESVADLSSFEKGLEVPEGNYLVDIYLNDIFLKTQYINFIENKGQLSPCITKAELKSWNVNLNLITDEQNKDKNNVEQKNELDEHCQSLTSLISQATANFDVGSQKLNLTIPQVYLVNQSRGFIPPELWDDGIVAGFITYILNGSKTRNDGSPDTHFTHLNLQSGINLGPWRLRDNSIYSYDSINKSSWKHLNTYIERGINKLYSRLIIGDSYTQSEVFDSINFRGFQLSSDEVMLPDSQRGFAPIIRGVARTNAEVTIQQNGYVIYRNSFPPGPFVIDDLYSTSNSGDLEVTITESDGSTQTFTVPYSSVPLLQREGHTKYSVTVGSYRSGNDEQERPYFLQGSVIHGLPAGWTIYGGTQLSKNYQAASIGVGKNIGRFGALSFDITEARSILPDDSTHRGQSIRILYNKSINELGTRVQLAGYKYATSGFYTLAETTYKKMRGNYIQTEDGVVEVSGLPQSYYDLIYNKRQRIQLNITQKIGDQSTLYIIGTNQRYWNSKKQDNQLQIGLNTIIKGINLGLNYSLSKTSWNDSKDQMLAFNTSIPFSNFMRSDNDSIWQNASLSTNSSHNMKKRFNNTIGLNGTLLEDKNLSYNIQTGYSHEEESDSTGYASLSYNGSYMNSNIGYNYTDTSHQINYGMSGSILAHSGGITLSQPIYQTAVLVKVPEVKNIKLENNSGITTDSNGYAVLPYISEYKENRIALDTNSFSNNIEIDNAVKSVVPTRGAISAITFEPSVGIKAITTLTHKGKPVPFGAIVDSGNNTGIVADEGKVYLTGLSPSGQLKVNWGSKKEQQCLVNYTLPPQDPDKLYVEYSAECHPIKE

Flanking regions ( +/- flanking 50bp)

CGACGTTAGATAATCATTATTTAATATTGTAGAATTGAAAGAGTGATATTATGTCATTTTCAACAGGTATAAATAGCTTAAGCGGCATAAAAATAAATAACGTAAAATTATTTATTTTTATACTTGCGCTACTATTTTCAGTTGACTCAAAGTCTGAGGAGGAGTTTTATTATAACCCCTATTTCTTATCAGATAACCCGGAGTCTGTCGCTGATCTATCTTCTTTTGAGAAAGGATTAGAAGTACCTGAAGGTAATTATCTGGTTGATATTTACTTAAATGACATATTCTTAAAAACCCAATATATCAATTTTATTGAGAATAAAGGGCAGCTATCACCATGTATCACAAAAGCAGAGCTAAAAAGTTGGAATGTTAATTTAAATCTCATAACGGATGAACAAAATAAAGATAAAAATAATGTTGAACAGAAAAATGAGCTCGATGAACATTGTCAGTCACTTACTTCATTAATTTCTCAAGCCACAGCAAATTTTGATGTTGGTTCACAAAAGCTCAATCTCACTATACCTCAAGTATATTTAGTCAATCAGTCTCGAGGCTTTATTCCACCAGAGTTATGGGATGATGGTATTGTGGCTGGATTTATTACCTATATTTTAAATGGGAGTAAAACTCGCAACGATGGTAGCCCAGATACTCATTTTACTCATCTCAATTTACAAAGTGGGATCAATCTTGGGCCATGGCGTCTTCGTGATAACTCTATTTATTCTTATGATTCTATTAATAAATCAAGTTGGAAACATCTGAATACTTATATAGAACGTGGTATTAATAAATTATATTCTCGTCTTATTATTGGTGATAGCTACACACAAAGTGAAGTTTTCGACAGCATCAACTTTAGAGGCTTTCAACTGTCATCTGATGAAGTTATGTTACCGGATAGCCAAAGAGGTTTTGCTCCGATTATTCGAGGTGTCGCCCGGACTAATGCCGAGGTTACTATACAGCAAAATGGTTATGTGATTTACCGTAACTCTTTTCCACCGGGTCCTTTTGTTATTGATGATCTCTATTCAACAAGTAACAGTGGCGATTTAGAGGTAACCATTACTGAGTCTGATGGTTCAACACAAACCTTTACTGTGCCATATTCATCAGTCCCTTTATTACAAAGGGAAGGGCATACCAAATATTCAGTGACTGTAGGTAGTTACCGTTCGGGTAATGATGAGCAGGAGCGGCCTTATTTTTTACAAGGATCAGTGATCCACGGCTTACCTGCGGGTTGGACCATTTATGGAGGAACCCAGTTATCCAAAAATTACCAAGCGGCAAGTATTGGGGTAGGTAAAAATATTGGGCGTTTTGGGGCTTTATCATTTGATATTACCGAAGCGAGATCAATACTACCCGATGACTCTACACACCGTGGGCAATCGATACGTATTCTTTATAATAAATCTATCAATGAATTAGGCACAAGGGTGCAACTTGCCGGTTATAAATATGCGACGAGTGGTTTTTATACTTTAGCAGAGACTACTTATAAAAAAATGAGAGGAAATTATATACAAACGGAGGATGGTGTTGTTGAAGTTAGTGGATTACCACAAAGTTACTACGACCTTATTTATAATAAAAGGCAAAGGATACAACTCAATATTACTCAAAAAATAGGTGATCAATCTACGTTATATATTATTGGTACTAATCAGCGTTATTGGAATTCTAAAAAACAAGATAATCAATTACAGATAGGCCTTAATACTATTATTAAAGGTATTAATTTAGGCCTAAATTATAGCTTATCTAAAACATCATGGAATGATAGTAAAGATCAGATGCTAGCATTTAATACTAGTATTCCTTTTAGTAACTTTATGCGTTCTGATAATGATTCTATATGGCAAAATGCGAGTTTAAGTACTAACTCCTCGCATAACATGAAGAAACGTTTTAACAATACTATAGGATTAAACGGTACATTATTGGAAGATAAAAACTTAAGTTACAATATTCAAACAGGTTATTCTCATGAAGAAGAATCGGACTCAACAGGATATGCCTCATTAAGTTATAACGGTTCTTATATGAATAGCAATATAGGTTATAACTATACCGATACATCACATCAAATAAATTATGGTATGAGTGGCAGTATTTTAGCTCACTCAGGTGGTATAACACTTAGTCAGCCTATATATCAAACAGCGGTGTTAGTAAAAGTACCTGAAGTTAAAAATATAAAATTAGAAAACAATAGTGGCATCACGACAGACAGTAATGGTTATGCGGTTTTACCTTATATTTCTGAATATAAAGAAAATCGTATTGCATTGGATACCAATTCATTCTCTAACAATATTGAAATAGATAATGCGGTGAAAAGCGTAGTTCCTACTCGTGGAGCCATTAGTGCGATCACATTTGAGCCTAGTGTTGGGATAAAAGCAATTACGACATTAACCCATAAAGGGAAACCAGTACCTTTCGGGGCTATCGTTGATTCAGGTAATAATACTGGGATTGTGGCAGATGAAGGAAAAGTTTATTTAACAGGGTTATCACCTTCAGGACAATTAAAAGTGAATTGGGGTAGTAAGAAAGAGCAACAATGCTTAGTAAATTACACATTACCACCACAAGATCCAGATAAACTTTATGTTGAATATAGTGCAGAGTGCCACCCTATTAAGGAATAAATAATGACTAATAATATTAAGGGTATTTTGACAACACTATGGTTATTTTT