Homologs in group_3647

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS10255 F4V73_RS10255 49.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 42.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 43.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_3647

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3647

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 6.4e-173 526 37 19 842 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 8.15e-167 511 36 20 864 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.08e-166 511 36 19 864 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 1.19e-163 502 36 20 841 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 1.77e-159 492 35 17 847 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.39e-159 491 35 20 852 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 3.33e-157 486 35 19 857 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 5.63e-149 464 34 19 845 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 1.14e-133 424 34 26 859 3 afaC Outer membrane usher protein AfaC Escherichia coli
P46000 5.87e-131 416 33 20 845 3 fasD Outer membrane usher protein FasD Escherichia coli
P33408 4.06e-125 401 32 26 854 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P26949 6.52e-122 392 33 26 833 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 1.46e-114 373 31 30 855 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.46e-114 373 31 30 855 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33129 4.75e-112 367 33 25 832 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33388 2.06e-110 361 32 23 803 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 8.83e-109 358 33 25 822 3 aggC Outer membrane usher protein AggC Escherichia coli
Q8X5K8 2.95e-99 322 40 12 493 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33397 5.62e-93 315 29 26 870 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.02e-92 314 29 27 871 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 1.08e-91 311 30 26 809 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P45998 1.32e-91 311 29 24 843 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 8.87e-88 301 30 24 823 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P76655 3.93e-87 299 30 23 822 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 2.37e-85 294 28 23 818 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P33410 4.79e-85 294 30 31 888 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 1.99e-82 288 29 15 723 3 None Outer membrane usher protein CS3-2 Escherichia coli
P07110 1.27e-77 273 29 27 827 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 8.56e-77 270 28 28 849 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P77196 1.04e-76 271 28 30 880 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P37868 1.48e-71 255 30 28 780 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53512 1.83e-67 244 27 27 803 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 1.02e-66 242 27 28 803 3 cssD Outer membrane usher protein CssD Escherichia coli
P76137 2.42e-61 216 36 9 352 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
Q7DBJ9 4.79e-61 215 37 10 359 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
Q8X5K7 2.66e-56 201 35 10 348 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 1.75e-55 209 28 28 811 3 faeD Outer membrane usher protein FaeD Escherichia coli
P12050 2.58e-44 176 25 31 778 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 1.22e-40 164 26 40 873 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08460
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1745452 - 1748166 (strand: 1)
Length 2715 (nucleotides) / 904 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3647
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKVSRNMMNTPPRRPFFRYRPLAWLLFAAASPVMADDYFDPGFLGVAGENSDVDLSAFSQAGGVAEGEYTVSVFINQQDTGQYTLSFVKNTKGQIAPELTPAQLETFGVNVPQIPDLKNLPSDLPVTDLGALIPQAETRLDLARLRLDISVPQVAMQSVINRNSDPALWDDGIPALMANYNLSAGRTTNSYDGGMKTHNNNLFASVRAGANAGPWRLRSNITHTRFEYSGGRDQSATSENRTYFSNTYIARDIRALRSSLQIGETSTGSDVFDGVSFKGIKLTSNEQMLPGQLRGYAPAISGVANSNARITVRQNGNIVYETYVAPGAFYINDIQQAGLSGDYDVTVTEADGTERQFVVPYSSLPVMLRPGGWKYEMAAGRYDGNITTSSRRSDFMMGTVIYGLHNDVTLFGGALLAKDYQALNAGSGISLGDFGAVSADVTHSTVRFGGDNKQDDDRKTGQSYRIRYSKSMMSTGTSVDLTALRYSTEHFYNFSEFNSHGYRLEDGVSPWTLQRRRSSFQTQLSQQMGDYGSLHFRANRDDYWGSDRKLTGMSLGYSTSIKGISYGVNYNIDRVKDSNNNWPENRQLSLNVSVPFSLFGYGQNLQSMYATYSVTHDNNGRTQNNTGLSGSLMDSKLSYGATQSWGNQGQVANTNLNTGYQGNKGNISAGYSYSDNTQAVNMSASGGMLIHSEGVTFGRSMGDSVALVSAPGAAGASVNGGSAVTDSGGYAVAPYLADYNKNSIGLDPSTLPDDVDLTQSNINVYPTKGAVVKANFATRIGYQVLMTLRHGAKSVPFGAIATLIDDNAGESISSIVGDAGQVYLTGLPETGKLQVKWGESDEQQCQVSFDLRHLTTTDDMPVRQVTYKCAGGEAQTEVINVTTKTTSPSVTPNSKSRWLITTAQ

Flanking regions ( +/- flanking 50bp)

GTTCCCGGTGCAACGGCGGGTTTCCTGCATCCGCAGGAGAGAGGAAGAGAATGAAAGTATCCCGTAATATGATGAATACACCGCCCCGGCGCCCTTTTTTCCGTTACCGTCCGCTGGCATGGCTGTTATTTGCCGCCGCTTCGCCGGTGATGGCAGATGATTATTTCGACCCGGGCTTTTTAGGTGTTGCGGGTGAAAACAGTGATGTTGATTTGTCCGCATTCTCACAGGCGGGCGGCGTGGCTGAGGGAGAATATACGGTATCCGTTTTTATCAATCAGCAAGATACAGGTCAGTACACACTCAGTTTTGTCAAAAACACAAAAGGTCAGATAGCGCCGGAACTGACACCGGCGCAGCTGGAAACATTCGGTGTTAATGTTCCGCAGATCCCGGATTTAAAAAATCTGCCGTCTGATTTGCCGGTAACCGATTTAGGCGCGCTTATCCCGCAGGCAGAGACACGGCTGGATCTGGCACGTCTGCGTCTGGATATCAGTGTTCCGCAGGTTGCCATGCAATCTGTCATTAACCGTAACAGTGATCCTGCTTTATGGGATGACGGTATTCCCGCGCTGATGGCGAACTATAACCTGAGCGCCGGGCGCACAACCAACAGCTATGACGGCGGGATGAAAACCCATAATAACAACCTGTTCGCCTCCGTCCGTGCGGGAGCCAATGCAGGTCCGTGGCGTCTGCGCAGCAACATTACCCATACCCGTTTTGAATACAGCGGCGGGCGGGATCAATCCGCAACCAGTGAAAACAGAACCTATTTTTCCAATACCTATATAGCCCGGGATATCCGTGCGCTGCGCTCGTCATTACAAATCGGTGAAACCAGTACCGGCAGTGATGTTTTCGACGGTGTTTCCTTTAAAGGCATAAAACTGACCTCCAATGAGCAGATGCTGCCCGGTCAGTTACGCGGCTATGCTCCGGCGATAAGCGGCGTAGCAAACAGTAATGCCCGTATCACCGTGCGCCAGAACGGCAACATTGTTTATGAAACCTATGTCGCCCCGGGCGCATTCTACATAAATGATATTCAGCAGGCCGGATTATCAGGGGACTATGATGTCACGGTGACCGAAGCAGACGGCACTGAACGTCAGTTTGTGGTGCCCTATTCGTCACTGCCGGTAATGCTGCGCCCGGGCGGTTGGAAATATGAAATGGCCGCCGGTCGCTATGACGGCAACATCACCACCAGCTCACGCCGCTCCGATTTTATGATGGGGACGGTTATCTATGGTCTGCATAATGATGTGACATTATTCGGCGGTGCATTACTGGCAAAAGATTATCAGGCGCTCAATGCGGGCAGCGGGATCTCCCTGGGCGATTTCGGTGCGGTTTCTGCTGATGTGACACATTCAACTGTCCGCTTCGGCGGAGATAATAAGCAGGATGATGATCGCAAAACCGGTCAGTCATACCGGATCCGCTACTCAAAAAGTATGATGTCGACCGGAACATCGGTTGATTTAACCGCTCTGCGTTACTCTACTGAGCATTTCTATAACTTCAGTGAATTTAACAGTCACGGCTATCGTCTTGAGGACGGAGTCAGCCCCTGGACATTACAGCGCCGCCGCAGCAGCTTCCAGACACAGCTGAGCCAGCAGATGGGCGATTACGGTTCACTGCATTTTCGTGCCAACCGCGATGATTACTGGGGAAGTGACCGCAAACTGACCGGGATGTCTCTCGGGTACAGTACCAGTATCAAAGGCATCAGTTACGGCGTGAACTACAACATTGACCGCGTAAAAGACAGTAACAATAACTGGCCGGAAAACCGTCAGTTATCCCTGAATGTCAGTGTGCCGTTCAGCCTGTTCGGCTACGGGCAGAATCTGCAATCCATGTATGCCACCTATTCTGTGACCCATGATAATAACGGCAGAACACAAAACAATACCGGACTGAGCGGCAGCCTGATGGACAGCAAACTCTCCTATGGCGCAACGCAAAGCTGGGGTAATCAGGGACAGGTTGCAAATACAAATCTGAATACCGGTTATCAGGGAAATAAAGGCAATATCAGTGCCGGTTACAGCTACAGCGACAATACTCAGGCAGTCAATATGAGTGCGTCAGGCGGTATGTTGATCCATTCCGAAGGTGTCACATTCGGTCGCTCAATGGGTGATTCAGTGGCATTAGTCAGCGCCCCGGGCGCTGCCGGTGCCAGTGTTAACGGCGGAAGTGCCGTTACTGACAGCGGGGGTTATGCCGTCGCACCTTATCTTGCTGATTACAATAAAAACAGCATCGGGCTTGATCCGTCCACACTTCCGGATGATGTCGATTTAACACAATCAAACATCAATGTTTACCCGACAAAAGGAGCTGTTGTAAAAGCAAATTTTGCCACACGGATTGGGTATCAGGTACTGATGACCCTCAGACACGGCGCAAAAAGTGTTCCGTTCGGGGCGATTGCCACGCTTATTGATGATAATGCAGGGGAAAGTATCAGCAGTATCGTTGGTGATGCGGGTCAGGTCTATCTGACCGGGCTGCCGGAAACCGGGAAATTGCAGGTGAAGTGGGGAGAATCCGATGAACAGCAATGTCAGGTCAGTTTCGATTTACGCCATCTGACCACAACAGACGATATGCCTGTCCGCCAGGTGACATATAAGTGCGCGGGCGGTGAGGCACAAACTGAGGTAATCAATGTTACAACCAAAACTACCAGCCCCTCAGTTACACCAAACTCTAAATCACGCTGGTTAATAACCACTGCACAGTAAATCAGAGGATAATATGAAAATTAAAAATAACGAAAATCGTACCAAAATAA