Homologs in group_6

Help

21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 36.7 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 35.2 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 35.2 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 36.7 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 35.2 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 36.7 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 35.2 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 36.7 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 36.7 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 35.2 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 28.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 35.8 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 35.4 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 30.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 19.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 30.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 29.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 49.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 37.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 26.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 42.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 6.4e-173 526 37 19 842 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 8.15e-167 511 36 20 864 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.08e-166 511 36 19 864 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 1.19e-163 502 36 20 841 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 1.77e-159 492 35 17 847 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.39e-159 491 35 20 852 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 3.33e-157 486 35 19 857 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 5.63e-149 464 34 19 845 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 1.14e-133 424 34 26 859 3 afaC Outer membrane usher protein AfaC Escherichia coli
P46000 5.87e-131 416 33 20 845 3 fasD Outer membrane usher protein FasD Escherichia coli
P33408 4.06e-125 401 32 26 854 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P26949 6.52e-122 392 33 26 833 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 1.46e-114 373 31 30 855 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.46e-114 373 31 30 855 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33129 4.75e-112 367 33 25 832 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33388 2.06e-110 361 32 23 803 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 8.83e-109 358 33 25 822 3 aggC Outer membrane usher protein AggC Escherichia coli
Q8X5K8 2.95e-99 322 40 12 493 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33397 5.62e-93 315 29 26 870 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.02e-92 314 29 27 871 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 1.08e-91 311 30 26 809 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P45998 1.32e-91 311 29 24 843 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 8.87e-88 301 30 24 823 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P76655 3.93e-87 299 30 23 822 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 2.37e-85 294 28 23 818 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P33410 4.79e-85 294 30 31 888 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 1.99e-82 288 29 15 723 3 None Outer membrane usher protein CS3-2 Escherichia coli
P07110 1.27e-77 273 29 27 827 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 8.56e-77 270 28 28 849 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P77196 1.04e-76 271 28 30 880 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P37868 1.48e-71 255 30 28 780 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53512 1.83e-67 244 27 27 803 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 1.02e-66 242 27 28 803 3 cssD Outer membrane usher protein CssD Escherichia coli
P76137 2.42e-61 216 36 9 352 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
Q7DBJ9 4.79e-61 215 37 10 359 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
Q8X5K7 2.66e-56 201 35 10 348 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 1.75e-55 209 28 28 811 3 faeD Outer membrane usher protein FaeD Escherichia coli
P12050 2.58e-44 176 25 31 778 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 1.22e-40 164 26 40 873 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08460
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1745452 - 1748166 (strand: 1)
Length 2715 (nucleotides) / 904 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKVSRNMMNTPPRRPFFRYRPLAWLLFAAASPVMADDYFDPGFLGVAGENSDVDLSAFSQAGGVAEGEYTVSVFINQQDTGQYTLSFVKNTKGQIAPELTPAQLETFGVNVPQIPDLKNLPSDLPVTDLGALIPQAETRLDLARLRLDISVPQVAMQSVINRNSDPALWDDGIPALMANYNLSAGRTTNSYDGGMKTHNNNLFASVRAGANAGPWRLRSNITHTRFEYSGGRDQSATSENRTYFSNTYIARDIRALRSSLQIGETSTGSDVFDGVSFKGIKLTSNEQMLPGQLRGYAPAISGVANSNARITVRQNGNIVYETYVAPGAFYINDIQQAGLSGDYDVTVTEADGTERQFVVPYSSLPVMLRPGGWKYEMAAGRYDGNITTSSRRSDFMMGTVIYGLHNDVTLFGGALLAKDYQALNAGSGISLGDFGAVSADVTHSTVRFGGDNKQDDDRKTGQSYRIRYSKSMMSTGTSVDLTALRYSTEHFYNFSEFNSHGYRLEDGVSPWTLQRRRSSFQTQLSQQMGDYGSLHFRANRDDYWGSDRKLTGMSLGYSTSIKGISYGVNYNIDRVKDSNNNWPENRQLSLNVSVPFSLFGYGQNLQSMYATYSVTHDNNGRTQNNTGLSGSLMDSKLSYGATQSWGNQGQVANTNLNTGYQGNKGNISAGYSYSDNTQAVNMSASGGMLIHSEGVTFGRSMGDSVALVSAPGAAGASVNGGSAVTDSGGYAVAPYLADYNKNSIGLDPSTLPDDVDLTQSNINVYPTKGAVVKANFATRIGYQVLMTLRHGAKSVPFGAIATLIDDNAGESISSIVGDAGQVYLTGLPETGKLQVKWGESDEQQCQVSFDLRHLTTTDDMPVRQVTYKCAGGEAQTEVINVTTKTTSPSVTPNSKSRWLITTAQ

Flanking regions ( +/- flanking 50bp)

GTTCCCGGTGCAACGGCGGGTTTCCTGCATCCGCAGGAGAGAGGAAGAGAATGAAAGTATCCCGTAATATGATGAATACACCGCCCCGGCGCCCTTTTTTCCGTTACCGTCCGCTGGCATGGCTGTTATTTGCCGCCGCTTCGCCGGTGATGGCAGATGATTATTTCGACCCGGGCTTTTTAGGTGTTGCGGGTGAAAACAGTGATGTTGATTTGTCCGCATTCTCACAGGCGGGCGGCGTGGCTGAGGGAGAATATACGGTATCCGTTTTTATCAATCAGCAAGATACAGGTCAGTACACACTCAGTTTTGTCAAAAACACAAAAGGTCAGATAGCGCCGGAACTGACACCGGCGCAGCTGGAAACATTCGGTGTTAATGTTCCGCAGATCCCGGATTTAAAAAATCTGCCGTCTGATTTGCCGGTAACCGATTTAGGCGCGCTTATCCCGCAGGCAGAGACACGGCTGGATCTGGCACGTCTGCGTCTGGATATCAGTGTTCCGCAGGTTGCCATGCAATCTGTCATTAACCGTAACAGTGATCCTGCTTTATGGGATGACGGTATTCCCGCGCTGATGGCGAACTATAACCTGAGCGCCGGGCGCACAACCAACAGCTATGACGGCGGGATGAAAACCCATAATAACAACCTGTTCGCCTCCGTCCGTGCGGGAGCCAATGCAGGTCCGTGGCGTCTGCGCAGCAACATTACCCATACCCGTTTTGAATACAGCGGCGGGCGGGATCAATCCGCAACCAGTGAAAACAGAACCTATTTTTCCAATACCTATATAGCCCGGGATATCCGTGCGCTGCGCTCGTCATTACAAATCGGTGAAACCAGTACCGGCAGTGATGTTTTCGACGGTGTTTCCTTTAAAGGCATAAAACTGACCTCCAATGAGCAGATGCTGCCCGGTCAGTTACGCGGCTATGCTCCGGCGATAAGCGGCGTAGCAAACAGTAATGCCCGTATCACCGTGCGCCAGAACGGCAACATTGTTTATGAAACCTATGTCGCCCCGGGCGCATTCTACATAAATGATATTCAGCAGGCCGGATTATCAGGGGACTATGATGTCACGGTGACCGAAGCAGACGGCACTGAACGTCAGTTTGTGGTGCCCTATTCGTCACTGCCGGTAATGCTGCGCCCGGGCGGTTGGAAATATGAAATGGCCGCCGGTCGCTATGACGGCAACATCACCACCAGCTCACGCCGCTCCGATTTTATGATGGGGACGGTTATCTATGGTCTGCATAATGATGTGACATTATTCGGCGGTGCATTACTGGCAAAAGATTATCAGGCGCTCAATGCGGGCAGCGGGATCTCCCTGGGCGATTTCGGTGCGGTTTCTGCTGATGTGACACATTCAACTGTCCGCTTCGGCGGAGATAATAAGCAGGATGATGATCGCAAAACCGGTCAGTCATACCGGATCCGCTACTCAAAAAGTATGATGTCGACCGGAACATCGGTTGATTTAACCGCTCTGCGTTACTCTACTGAGCATTTCTATAACTTCAGTGAATTTAACAGTCACGGCTATCGTCTTGAGGACGGAGTCAGCCCCTGGACATTACAGCGCCGCCGCAGCAGCTTCCAGACACAGCTGAGCCAGCAGATGGGCGATTACGGTTCACTGCATTTTCGTGCCAACCGCGATGATTACTGGGGAAGTGACCGCAAACTGACCGGGATGTCTCTCGGGTACAGTACCAGTATCAAAGGCATCAGTTACGGCGTGAACTACAACATTGACCGCGTAAAAGACAGTAACAATAACTGGCCGGAAAACCGTCAGTTATCCCTGAATGTCAGTGTGCCGTTCAGCCTGTTCGGCTACGGGCAGAATCTGCAATCCATGTATGCCACCTATTCTGTGACCCATGATAATAACGGCAGAACACAAAACAATACCGGACTGAGCGGCAGCCTGATGGACAGCAAACTCTCCTATGGCGCAACGCAAAGCTGGGGTAATCAGGGACAGGTTGCAAATACAAATCTGAATACCGGTTATCAGGGAAATAAAGGCAATATCAGTGCCGGTTACAGCTACAGCGACAATACTCAGGCAGTCAATATGAGTGCGTCAGGCGGTATGTTGATCCATTCCGAAGGTGTCACATTCGGTCGCTCAATGGGTGATTCAGTGGCATTAGTCAGCGCCCCGGGCGCTGCCGGTGCCAGTGTTAACGGCGGAAGTGCCGTTACTGACAGCGGGGGTTATGCCGTCGCACCTTATCTTGCTGATTACAATAAAAACAGCATCGGGCTTGATCCGTCCACACTTCCGGATGATGTCGATTTAACACAATCAAACATCAATGTTTACCCGACAAAAGGAGCTGTTGTAAAAGCAAATTTTGCCACACGGATTGGGTATCAGGTACTGATGACCCTCAGACACGGCGCAAAAAGTGTTCCGTTCGGGGCGATTGCCACGCTTATTGATGATAATGCAGGGGAAAGTATCAGCAGTATCGTTGGTGATGCGGGTCAGGTCTATCTGACCGGGCTGCCGGAAACCGGGAAATTGCAGGTGAAGTGGGGAGAATCCGATGAACAGCAATGTCAGGTCAGTTTCGATTTACGCCATCTGACCACAACAGACGATATGCCTGTCCGCCAGGTGACATATAAGTGCGCGGGCGGTGAGGCACAAACTGAGGTAATCAATGTTACAACCAAAACTACCAGCCCCTCAGTTACACCAAACTCTAAATCACGCTGGTTAATAACCACTGCACAGTAAATCAGAGGATAATATGAAAATTAAAAATAACGAAAATCGTACCAAAATAA