Orthogroup:group_3030


Homologs in group_3030

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18065 FBDBKF_18065 Morganella morganii S1 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
EHELCC_16765 EHELCC_16765 Morganella morganii S2 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
NLDBIP_17685 NLDBIP_17685 Morganella morganii S4 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
LHKJJB_17605 LHKJJB_17605 Morganella morganii S3 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
HKOGLL_17420 HKOGLL_17420 Morganella morganii S5 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
F4V73_RS10215 F4V73_RS10215 Morganella psychrotolerans vsr DNA mismatch endonuclease Vsr

Distribution of group_3030 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3030 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3030

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3030.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 vsr 6

Product

# Product Occurence
1 G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein 5
2 DNA mismatch endonuclease Vsr 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3727 6 L Replication, recombination and repair (L) G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07458 6 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03852 6 DNA mismatch endonuclease Vsr

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
DNA mismatch endonuclease Vsr 1
Type II nicking enzyme V.HpaIIP 1
Type II nicking enzyme V.NaeI 1
Type II nicking enzyme V.NmeAIP 1
Type II nicking enzyme V.NmeDIP 1
Type II nicking enzyme V.XorIIP 1

Protein length

Min length 155
Max length 156
Mean length (sd) 155.8 (0.4)
Median length 156.0

Protein length distribution