Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 23.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05725 PMI_RS05725 21.2 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 20.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 25.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 27.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 24.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 26.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 20.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 25.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 25.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37868 3.35e-171 516 35 10 805 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 5.15e-142 440 31 9 752 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 6.14e-105 343 28 22 818 3 faeD Outer membrane usher protein FaeD Escherichia coli
P43662 1.15e-60 223 25 25 790 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 7.57e-55 206 26 21 765 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 3.44e-52 199 25 25 812 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P46009 3.85e-52 199 24 27 805 3 focD Outer membrane usher protein FocD Escherichia coli
Q8XDD1 8.46e-52 197 25 24 751 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 2.68e-50 193 23 26 810 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P76655 4.95e-49 189 25 28 798 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P33341 2.99e-48 187 23 27 838 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P30130 7.5e-46 180 23 30 883 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P77468 1.21e-44 176 23 27 819 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P77196 1.72e-43 173 23 28 791 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 3.8e-42 169 24 31 805 1 papC Outer membrane usher protein PapC Escherichia coli
P53517 4.21e-42 169 23 34 843 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33388 6.21e-42 167 25 25 726 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P75750 9.31e-42 167 24 33 851 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P26949 4.43e-41 165 24 31 793 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P53514 8.31e-41 164 23 26 800 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P46005 1.25e-39 161 25 33 809 3 aggC Outer membrane usher protein AggC Escherichia coli
P33408 1.23e-37 154 22 28 796 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P33397 5.37e-37 152 26 23 620 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
Q56983 8.45e-37 152 24 31 809 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 8.45e-37 152 24 31 809 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P45997 1.22e-36 151 25 26 722 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 1.65e-36 151 26 23 620 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 2.88e-35 147 25 26 719 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P21647 6.3e-34 143 23 28 787 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P46000 1.73e-33 142 24 23 728 3 fasD Outer membrane usher protein FasD Escherichia coli
P33410 4.58e-29 128 22 24 721 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 2.3e-28 125 24 24 625 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53512 3.87e-26 118 22 26 784 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 2.76e-25 115 22 28 818 3 cssD Outer membrane usher protein CssD Escherichia coli
P45420 9.09e-25 114 22 32 815 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q8X5K7 4.32e-21 99 29 10 268 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 8.89e-21 100 22 15 463 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q7DBJ9 8.11e-07 55 25 14 312 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 0.00013 48 24 13 309 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05165
Feature type CDS
Gene pefC
Product PefC/AfrB family outer membrane usher protein
Location 1128290 - 1130665 (strand: 1)
Length 2376 (nucleotides) / 791 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MRLKSINAFVLSLLVSPFYVCADLNMDFLHGGVQLQAAGVFDENTNYPAGHYIVEVIFNRKLISKKELIISPEDNENLCLKKDWINELSLPIKLNLFELYYHPERDCYDISRYPGAQVIFDNSKQTLTFSIPQIALDESLRRQEWDYGITGIKLNYSGYISKTSSSQAQIYGDFDLYANLGRWVAYVRSSYQRNSGTETSEATVSTAIKSIQGSFTVGKTITSLSILPNFAFYGMSLRSERDMRPWEKRGYAPVISGVANSNAKITISQNGYVLSSQVVPAGAYQLKNIAPVSNGNITVTVEESDGTKTVRYYPVATLSSLLRTDEINYNIAIGEKETVGKRENSLFFLGAFDYGLTNVTVHAAGILHNNYKSAALGMSKDFGRFGAMSFTANTAVSVFQKQTPTAPEVRQSGISYSLQYANSLTDNTNLQLLAYRYTGKDYVDFNEFNSNALYHRSNRKERYETILSQSFDGSFVSLSAWMQTYRNSISNEVGANITYNTTIKSVDFSLSADYQKLNDYEHDNYIISVGINIPFSLYDKNHFWANSVSYDRKNKASFNSGVSGSINEKINYSINTSKDRDNWSNSAYFGIDHSIINTGYAISQNGHQTTSSINASGSLLATPDTGLLFSNVRRDTVAIAKIKNIEGITFNDSPPTDKEGNTIVGVSPYIENNLKINTEEIPNNVELLDSVQNFTPADKAIIYREFKYSTIQRYILRIKNKNGDFISAGSAVRNKNDEYIGFVSNSGVLLLNLLDKPNKLFVISPNGEKCTLNLEKVESNDHKIMEIECNE

Flanking regions ( +/- flanking 50bp)

AAGGGTCATTGATCCTTTATTTCATTTGAAAATATTAATGGATAATATCAATGCGTTTAAAATCAATTAATGCTTTTGTGTTATCCTTGTTAGTAAGTCCATTTTATGTTTGCGCAGATTTAAATATGGACTTCTTACATGGAGGAGTTCAACTGCAAGCTGCTGGTGTATTTGATGAAAATACCAATTATCCTGCTGGGCATTATATTGTTGAGGTTATTTTTAATCGAAAATTAATTAGTAAAAAAGAATTAATTATCTCACCAGAAGATAATGAAAATTTATGTTTAAAAAAAGATTGGATTAATGAGTTATCGCTTCCAATAAAATTAAATTTATTTGAATTATATTATCATCCTGAGCGCGATTGTTATGATATTAGCCGTTATCCTGGGGCTCAGGTTATTTTTGATAATTCGAAGCAAACTTTAACATTTAGTATTCCTCAAATTGCATTAGATGAATCTCTGCGCCGGCAGGAATGGGATTATGGGATAACAGGTATTAAATTAAACTATTCGGGCTATATTTCTAAAACCAGTTCTTCACAAGCACAAATTTATGGTGATTTTGATTTATATGCTAATTTAGGTCGTTGGGTCGCTTATGTTCGTAGTAGTTACCAAAGGAACTCGGGTACAGAAACATCGGAGGCAACAGTTTCCACAGCAATTAAATCAATACAAGGAAGTTTTACCGTAGGTAAAACAATAACCTCTTTATCAATATTACCTAACTTTGCTTTTTATGGAATGTCACTGCGCTCGGAAAGGGATATGCGCCCATGGGAAAAACGAGGTTATGCACCGGTTATTTCTGGTGTTGCAAACTCTAATGCTAAAATTACTATATCTCAAAATGGATATGTATTAAGTTCACAAGTTGTTCCCGCAGGGGCTTATCAATTAAAAAATATAGCACCAGTAAGTAATGGAAATATAACAGTGACAGTAGAAGAAAGTGATGGGACAAAAACAGTTCGCTATTATCCTGTTGCCACACTTTCTTCCTTATTACGCACAGATGAAATAAATTACAACATTGCTATCGGAGAAAAAGAAACAGTAGGTAAAAGAGAAAATAGTTTATTTTTTCTAGGTGCATTTGACTACGGATTAACTAATGTTACGGTTCATGCTGCGGGAATTTTGCATAATAATTATAAAAGTGCAGCATTAGGAATGAGTAAAGATTTTGGACGATTTGGTGCAATGTCATTTACTGCTAATACTGCTGTAAGTGTATTTCAAAAACAGACACCAACAGCACCCGAAGTTAGGCAGTCTGGTATCAGCTATTCGTTACAATATGCAAATTCATTGACTGATAATACTAATTTACAGCTACTCGCATATCGCTATACTGGTAAAGATTATGTTGATTTTAATGAATTTAATTCAAATGCTTTATATCATCGCAGTAATCGTAAAGAGCGTTATGAAACGATATTGTCCCAAAGTTTTGATGGTAGCTTTGTTAGCTTATCTGCTTGGATGCAAACATATAGAAATAGTATTAGTAATGAAGTTGGCGCAAATATTACTTACAATACAACAATTAAATCTGTCGATTTCTCATTATCAGCGGATTATCAAAAATTAAACGATTATGAGCATGATAATTATATTATTTCTGTTGGAATAAATATTCCCTTTAGCTTATATGATAAAAATCATTTTTGGGCAAATTCTGTTAGCTACGATAGGAAAAATAAAGCTAGTTTTAATTCTGGTGTTTCTGGAAGTATTAATGAAAAAATAAACTATAGTATCAATACAAGTAAAGATCGTGATAACTGGTCTAATTCTGCTTATTTTGGTATTGATCATAGTATTATTAATACGGGATATGCGATTTCTCAAAATGGCCATCAAACTACCAGTTCTATTAATGCTTCAGGAAGTTTATTAGCCACCCCAGATACAGGATTATTATTCAGTAATGTCAGAAGAGATACTGTCGCAATTGCAAAAATTAAAAATATAGAGGGTATAACATTCAATGACTCACCGCCAACTGACAAAGAAGGAAACACTATTGTTGGGGTATCACCATACATTGAAAATAATTTAAAAATAAATACAGAAGAAATTCCGAATAATGTTGAATTACTTGATTCTGTTCAAAATTTTACTCCAGCAGATAAAGCTATTATTTATCGCGAGTTTAAATATTCAACAATTCAAAGGTATATATTAAGAATAAAAAATAAAAATGGTGATTTTATTTCTGCTGGAAGTGCTGTTAGAAATAAAAATGATGAATATATAGGGTTTGTTTCAAATTCTGGGGTTCTTTTATTAAATTTATTAGATAAGCCTAATAAGCTATTCGTTATATCACCTAATGGTGAAAAATGTACTTTAAATTTGGAGAAAGTAGAATCTAATGATCATAAAATTATGGAAATTGAATGTAATGAATAGAATAGTATTTGTTTTTGCTTTAATCATATCGTCATTAACCTGTTTTAAAG