Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 48.2 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 46.6 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 46.6 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 48.2 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 46.6 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 48.2 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 46.6 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 48.2 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 48.2 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 46.6 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 29.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01675 F4V73_RS01675 48.3 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 34.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 19.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 30.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 35.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 31.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 37.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 43.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 28.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 37.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30130 0.0 815 48 7 836 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 0.0 799 48 7 840 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 791 47 8 842 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 0.0 790 47 10 857 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 0.0 773 45 8 855 3 focD Outer membrane usher protein FocD Escherichia coli
P77468 0.0 755 45 8 837 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 0.0 684 43 12 833 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 4.08e-177 535 37 16 842 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 1.18e-162 498 35 21 841 3 afaC Outer membrane usher protein AfaC Escherichia coli
P46005 1.37e-152 471 35 19 847 3 aggC Outer membrane usher protein AggC Escherichia coli
Q56983 2.36e-149 462 34 23 866 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 2.36e-149 462 34 23 866 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 7.26e-143 446 32 16 850 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 1.33e-142 445 33 20 840 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q8X5K8 2.44e-135 414 42 6 505 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33388 1.54e-118 381 32 17 802 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P45998 9.7e-116 374 30 21 838 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 5.3e-114 370 30 21 838 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 4.04e-113 368 30 20 834 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45997 3.06e-112 365 30 20 845 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 3.25e-107 352 31 22 784 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q7DBJ9 1.06e-100 320 44 3 379 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P33341 1.01e-99 332 30 19 779 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P76137 1.32e-95 307 43 3 379 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P15484 6.3e-95 321 29 11 752 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33410 2.15e-92 313 30 19 823 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P46000 4.76e-91 308 27 21 855 3 fasD Outer membrane usher protein FasD Escherichia coli
P77196 1.71e-86 297 28 24 850 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K7 2.26e-84 277 42 6 339 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P75750 2.18e-78 273 27 29 842 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P76655 2.95e-77 270 28 22 809 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53512 6.46e-76 267 27 20 778 3 cssD Outer membrane usher protein CssD Escherichia coli
P53514 7.93e-75 264 27 26 824 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P07110 2.67e-73 260 28 25 857 1 papC Outer membrane usher protein PapC Escherichia coli
P53513 9.19e-72 255 27 22 778 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 9.4e-61 224 27 25 836 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 1.61e-52 199 27 30 756 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 5.98e-33 140 24 33 846 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.62e-28 126 24 30 815 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01045
Feature type CDS
Gene -
Product fimbrial biogenesis usher protein
Location 222933 - 225470 (strand: 1)
Length 2538 (nucleotides) / 845 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKKFFRYSTLFIAINSGLWVSNVYADNYFNPAFLSDDTSAVADLSVFENEKRQLPGSYHVDIYLNDKFIRSGPLNFAASDDAPSGLQACLSSEFLVSLGISTVTGSDSDKNKNDCVNLGTIIPDSSSSFDFAKQKLSLSIPQAALSSQARGYIPPSQWDNGITALLINYAFNGSNNSGSNSANSSSYYLSLNNGVNLGAWRFRDRSSWSYQKNKNGAVSDKWQHISTYAERAIEKIQSQFVVGDSFTPSDVFDSLSFRGVQVMTDENMLPDSQKGFAPTIHGIAKTNAQVTVRQNGYIIYQTYVSPGAFIINDLYPTSSGGDLDVTVKENDGRTETYKVAYSAVPVLQREGQLKYAATVAEFRGNKSNQTASVFGQLTSAFGISNGFTLYGGTQLAKNYQSVAIGIGKNLNQFGAFSVDITHARSHLADDSDHQGQSLRFLYAKSLSDYGTNFQLLGYRYSTSGFYTLEDTTHKIMDGYSDEDNNGQRYFNLRQNKRSRIQANISQQLGEYGSIFLSGSLEDYWGTAEKNRLLQVGFNSTYHDMNYNISYNYNKNSHSAQADQGIALSVSIPLSEWLSSERSNNTAYASYNINTNNRHNVVQTAGINGTLLEQNNFGYSVQQGYTNQGVGASGNITANYQGSVANSNVGYNYSDGSRQLNYGLAGGIILHENGVTFSQPLGDTNILIAAPDAGDVLIENSAGVRTDWRGYAILPYANNYRQNRVALDPNTLATNVELQDSVLNVVPTKGAIVRTHFTTKVGSRVLLTLSYRQSLIPFGAIVTVYEESANTGIVGDSGQVYLSGLSADGKLLVKWGNATTQQCTVDYQLPAGSENKIITRLKSECR

Flanking regions ( +/- flanking 50bp)

ATAATAAATATAAGGGAGTTCCTGGCATGGCCAGTTCCTCTGTAAATAGTATGAAAAAATTCTTTAGATATTCTACATTATTTATTGCAATAAACAGTGGACTATGGGTATCTAACGTTTATGCGGATAATTATTTTAATCCCGCATTTTTATCTGATGACACCAGTGCCGTTGCAGACCTTTCTGTTTTTGAAAATGAAAAGAGGCAGCTTCCGGGATCTTATCATGTTGATATTTACCTCAATGATAAATTCATCCGAAGCGGACCATTGAATTTTGCCGCATCGGATGACGCTCCATCCGGACTTCAGGCATGTTTATCATCTGAATTTCTTGTATCACTTGGCATCAGTACTGTTACCGGATCGGATTCAGATAAAAATAAGAATGATTGTGTGAATTTAGGCACCATTATTCCGGACAGCAGCAGTTCTTTTGATTTTGCAAAGCAAAAGCTGAGTCTGAGTATTCCTCAGGCCGCTTTATCCAGCCAGGCTCGCGGATATATTCCGCCTTCACAATGGGATAACGGCATAACAGCGTTGTTAATTAATTATGCATTTAACGGCTCAAACAACAGTGGTAGTAATAGTGCCAATAGCAGCAGTTATTATTTAAGTTTAAATAATGGCGTCAATCTTGGTGCCTGGCGTTTCCGTGACCGTTCGAGTTGGAGTTATCAGAAAAACAAAAACGGAGCAGTCAGTGATAAATGGCAGCATATCAGTACTTATGCAGAGCGTGCTATTGAAAAAATTCAAAGTCAGTTCGTCGTGGGTGATAGTTTTACCCCTTCAGACGTTTTTGATTCACTGAGTTTTCGCGGCGTTCAGGTAATGACAGACGAAAATATGCTGCCGGATAGCCAGAAGGGATTTGCACCGACTATTCATGGTATTGCAAAAACGAATGCTCAGGTCACTGTTAGGCAGAATGGCTATATTATTTATCAGACGTATGTTTCGCCGGGTGCATTTATTATTAATGACCTTTATCCGACATCTTCCGGTGGTGATCTTGACGTCACGGTTAAAGAAAATGACGGACGGACGGAAACGTATAAAGTTGCGTATTCTGCTGTACCGGTGTTACAACGTGAAGGTCAGCTAAAATATGCGGCAACAGTTGCTGAGTTTCGCGGAAATAAAAGTAATCAGACCGCCTCTGTCTTTGGTCAGTTGACATCGGCTTTCGGGATCTCAAATGGTTTTACGTTATACGGCGGTACCCAACTGGCAAAAAATTATCAGTCCGTCGCTATTGGTATCGGAAAAAACCTTAATCAGTTCGGGGCATTTTCTGTCGACATTACCCATGCACGCAGTCATCTTGCAGATGATAGCGATCATCAGGGGCAGTCTCTGCGCTTTCTGTATGCAAAATCACTGAGTGATTACGGCACTAATTTTCAATTGCTAGGTTACCGGTATTCAACGTCAGGCTTTTATACATTGGAAGATACCACCCATAAGATTATGGATGGCTATTCTGATGAAGATAATAATGGTCAGCGATATTTTAATTTACGTCAGAATAAGCGCAGTCGTATACAGGCGAATATTTCCCAGCAACTCGGCGAATATGGCTCAATCTTTTTATCCGGAAGTCTGGAGGATTATTGGGGTACTGCGGAGAAAAACAGGTTGTTACAGGTTGGATTTAATTCAACTTACCATGATATGAACTACAACATCAGCTACAACTATAATAAAAATTCACATAGTGCACAGGCTGACCAAGGGATTGCACTGTCTGTTTCTATCCCGTTAAGTGAATGGTTGTCATCTGAACGGAGTAATAACACTGCCTACGCATCCTACAATATTAATACCAATAATCGCCATAACGTTGTACAAACAGCTGGAATAAACGGCACATTGCTGGAACAAAATAATTTTGGTTACAGTGTTCAGCAGGGGTATACCAATCAAGGTGTCGGCGCGAGCGGAAATATTACCGCAAATTATCAGGGCAGTGTTGCTAATAGTAATGTTGGCTATAATTACAGTGATGGTAGCCGTCAGCTTAATTATGGGTTGGCTGGTGGGATCATTTTACATGAAAATGGTGTAACATTCAGTCAGCCACTGGGAGATACCAATATATTGATCGCCGCCCCCGATGCCGGTGATGTTCTTATTGAGAATTCAGCCGGTGTGCGGACTGACTGGCGGGGATATGCTATTCTCCCTTATGCAAATAACTACCGGCAGAACCGTGTAGCATTAGATCCGAATACACTGGCAACGAATGTCGAGTTACAAGACAGTGTGTTGAACGTCGTTCCGACAAAAGGAGCGATTGTCAGAACACACTTTACGACTAAAGTAGGGAGCCGTGTATTACTGACACTGAGTTATCGTCAGAGCCTGATTCCGTTTGGTGCAATTGTGACTGTTTATGAAGAATCTGCAAATACAGGTATTGTCGGTGATAGTGGTCAGGTTTATCTTTCCGGTTTGTCAGCCGACGGAAAATTACTCGTAAAATGGGGTAATGCGACCACCCAGCAGTGTACAGTTGATTATCAATTACCCGCTGGTAGTGAAAATAAAATCATTACCCGGTTAAAAAGCGAATGTCGATAGAGAGAGTATTATGTCACGTATTATGTCGGTTTTTATAATTATCTTATTTA