Homologs in group_4

Help

22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 86.6 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 51.6 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 42.5 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 51.6 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 86.6 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 42.5 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 51.6 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 86.6 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 42.5 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 86.6 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 51.6 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 42.5 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 86.6 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 51.6 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 42.5 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 42.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 50.9 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 46.9 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 49.4 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 40.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 41.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 44.7 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 850 48 7 860 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 734 46 13 834 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 674 41 11 825 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 2.63e-174 528 37 14 818 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 3.52e-170 517 37 14 819 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 7.22e-91 310 29 20 831 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.51e-90 309 28 25 869 3 focD Outer membrane usher protein FocD Escherichia coli
Q8XDD1 5.55e-83 288 28 27 856 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 1.15e-81 285 28 28 856 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P42915 1.98e-79 278 28 23 835 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33129 3.76e-79 278 28 28 861 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P77468 8.72e-78 274 27 20 835 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 2.08e-77 272 28 25 802 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37924 4.8e-75 266 26 16 843 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53517 3.3e-70 252 28 28 861 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 1.27e-68 248 26 21 798 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P33397 1.33e-66 242 27 25 845 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.36e-66 242 27 25 846 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 3.54e-63 232 26 22 821 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 3.54e-62 229 25 25 852 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
Q56983 6.09e-59 220 26 26 813 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 6.09e-59 220 26 26 813 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33388 6.54e-59 219 25 26 824 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P26949 2.44e-54 206 26 21 815 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 2.88e-53 203 25 28 868 3 aggC Outer membrane usher protein AggC Escherichia coli
P46000 4.21e-52 199 25 25 839 3 fasD Outer membrane usher protein FasD Escherichia coli
P21647 1.33e-50 195 25 29 849 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33410 3e-49 191 26 28 856 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 3.65e-48 188 25 26 741 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53512 1.05e-46 183 23 24 747 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 1.82e-46 182 24 28 798 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 1.32e-44 177 25 27 831 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 2.35e-40 163 25 30 767 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 1.19e-35 142 31 10 342 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 5.32e-34 144 24 29 820 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 1.12e-31 133 24 15 505 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45420 2.8e-29 129 24 31 798 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 5.59e-13 75 26 12 348 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.07e-12 74 26 13 349 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10980
Feature type CDS
Gene -
Product outer membrane usher protein
Location 336178 - 338850 (strand: 1)
Length 2673 (nucleotides) / 890 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MTFDGPVDNNGLSVMKADANFLHGGAIRPVMRLKPLTVIILVSLLSAGIARAEDVTEFNTEVLELNERGQIDLSQFSQAGYVMPGVYTLGLKVNNSTLAERRIRFLAPDNDPQGSMACISPDMSEELGLISSAKKQLTWWHNGECVDPASLPGMTLRGDFGKGALRVNLPQAYLEYTADNWDPPSRWDEGIAGFILDYNLNTQLTKQREAGKSNRQDLSGNGTVGLNAGAWRLRADWQGRYARTNNETNQKWDWNRFYAYRAIPSLQAKLSLGENYLTSGMFDSFRYTGLSLDTDDMMLPPNLRGYAPEVSGVAKTNARVTVKQQGRVIYETTVAAGPFQIRDLSNALSGKLDVEVTEQDGSVQTFQVDAASVPYLTRPGLVRYKVALGKPSEYDHRVKGPEFVSSEFSWGISNGWSLYGGGLFAGKYTAISAGIGRDLLMLGALSADITQSRASLPQGETKKGGSYRLSYSKRFDATNSQVTFAGYRFSEHDFMTMSQYLSSRHHNTAATGNGKEMYTMTFSQALSSLNTNVYLNFNHQTYWDRPASDNWNISTSHYFDIGQVKNISLNLSAYRNNHENGHDDGMYVGLSLPWGESGSAGYSGQFSKGQNSQSADYSDQINDRSNYRVTAGLSSDHRTIGNGYLNYRGDKAELTATAGFEGDRYSSAGFTVRGGFTATPEGAALHRSGVMGGTRMLVDAGGVAEVPVRGGGAETTTNYFGKAVVSDVSNYYRSSVNVDLNKLGENAEATRSVVQGTLTEGAIGFRRFGIVSGHKAMAVLSLTEGDVPPFGAVVQNKDHVQTGMVSEDGMVWLSGINPGETMQVLWSGETQCEIRFPQEIPAGNLLLPCWPVAAPAEKIPANLSPEKTEKTLRWLTTSDAENTRESKNEE

Flanking regions ( +/- flanking 50bp)

CCGTACCGGTGTTCTGGTACGGGGTTCCGGTACGGAGAGCCGAAGTGAATATGACATTTGATGGTCCTGTGGATAACAACGGATTATCTGTGATGAAAGCCGATGCAAATTTTTTGCATGGCGGGGCAATTCGCCCGGTTATGCGGTTAAAACCTCTGACAGTCATTATTTTGGTTTCACTGTTATCTGCCGGTATTGCACGGGCAGAAGATGTCACCGAATTCAATACGGAAGTATTGGAGCTTAATGAACGCGGGCAAATAGACTTGTCACAATTTTCTCAGGCCGGTTATGTGATGCCCGGTGTGTATACATTAGGTCTGAAGGTGAATAACAGTACATTGGCGGAGCGGAGAATCCGCTTTTTGGCGCCGGATAATGACCCGCAAGGCAGTATGGCCTGTATCTCTCCGGACATGAGCGAAGAGCTGGGATTGATATCATCAGCCAAAAAACAACTGACCTGGTGGCATAACGGGGAGTGTGTTGATCCCGCATCACTGCCGGGTATGACACTGCGCGGTGACTTCGGGAAAGGTGCGCTGCGCGTCAATTTACCCCAGGCGTACCTTGAATACACCGCAGATAACTGGGATCCACCGTCCCGCTGGGATGAAGGGATCGCCGGGTTTATCCTGGATTACAACCTGAATACACAACTGACAAAACAGCGCGAAGCGGGAAAAAGTAACAGGCAGGATCTCAGCGGAAACGGGACTGTGGGTCTGAACGCCGGTGCCTGGCGCCTGAGAGCGGACTGGCAGGGGCGTTATGCGCGCACCAATAATGAAACTAATCAAAAGTGGGACTGGAACCGCTTCTATGCCTACCGCGCAATACCGTCATTACAGGCAAAACTGTCACTGGGGGAAAATTATCTGACCTCCGGCATGTTTGACAGTTTCCGGTATACCGGTCTGTCTCTGGATACGGACGATATGATGCTGCCGCCGAATTTACGTGGCTATGCACCGGAAGTGTCCGGGGTGGCGAAAACCAATGCCCGGGTCACTGTAAAGCAGCAGGGTCGGGTAATTTATGAAACAACGGTTGCGGCAGGCCCGTTTCAGATCCGTGATTTAAGTAATGCATTGTCCGGGAAACTGGATGTTGAAGTGACGGAGCAGGATGGCTCAGTACAGACTTTTCAGGTGGATGCAGCGAGTGTGCCTTATCTAACCCGTCCGGGTCTGGTGCGTTACAAAGTAGCACTGGGAAAACCCTCTGAATACGACCACCGGGTTAAAGGTCCTGAGTTTGTCAGCAGTGAATTTTCATGGGGTATCAGTAATGGCTGGTCACTCTATGGCGGCGGATTATTTGCCGGGAAATACACCGCTATTTCAGCGGGTATCGGGCGGGATTTGCTGATGCTGGGCGCATTATCTGCAGATATTACCCAATCACGGGCCAGTTTGCCGCAAGGCGAAACTAAAAAAGGGGGGTCATACCGGCTGAGCTATTCCAAGCGGTTTGATGCAACCAACAGCCAGGTGACATTTGCGGGATACCGTTTCTCAGAGCACGATTTTATGACCATGTCGCAATACCTGAGTTCCCGTCATCACAACACAGCCGCGACCGGTAACGGCAAAGAGATGTACACCATGACATTCAGTCAGGCGCTTAGCTCACTGAATACTAATGTATATCTGAATTTTAACCATCAGACCTATTGGGATCGCCCGGCAAGTGATAACTGGAACATTTCCACGTCTCACTATTTTGATATCGGGCAGGTAAAAAATATCAGCCTGAATTTGTCGGCTTACCGTAACAACCATGAGAATGGTCATGATGACGGAATGTATGTCGGGTTATCGCTGCCGTGGGGTGAAAGTGGCTCTGCCGGCTACAGCGGACAGTTCAGCAAAGGACAAAACAGTCAGTCCGCTGATTACAGCGATCAGATTAATGACCGGAGTAATTACCGCGTTACCGCCGGGCTCAGCAGTGATCACCGGACTATCGGAAACGGTTATCTCAATTACCGGGGCGATAAAGCAGAACTGACCGCAACAGCCGGTTTTGAAGGTGATCGCTACAGTTCGGCGGGTTTCACTGTGCGTGGTGGTTTTACGGCTACACCGGAAGGTGCGGCACTGCACCGCAGCGGTGTGATGGGAGGAACCCGCATGCTGGTGGATGCCGGTGGTGTGGCAGAGGTCCCGGTCAGAGGCGGGGGCGCAGAAACGACCACAAACTACTTCGGTAAAGCAGTTGTCAGCGATGTCAGCAACTATTACCGCAGCAGTGTCAATGTGGATCTGAATAAGCTGGGTGAAAATGCGGAAGCCACCCGTTCAGTGGTGCAGGGCACGCTGACTGAAGGCGCGATAGGTTTCCGCCGGTTCGGTATTGTGTCCGGGCATAAAGCGATGGCGGTACTCAGTCTGACTGAGGGAGATGTTCCGCCGTTTGGTGCGGTGGTGCAGAACAAGGATCACGTTCAGACAGGGATGGTCAGTGAAGACGGAATGGTCTGGCTATCCGGTATTAATCCGGGTGAAACAATGCAGGTGCTGTGGAGTGGGGAAACACAATGTGAAATTCGTTTTCCGCAAGAGATACCAGCCGGAAATCTGCTGTTACCTTGCTGGCCAGTTGCTGCACCGGCAGAGAAAATACCGGCCAATTTATCACCTGAAAAAACAGAAAAAACACTGCGCTGGCTGACAACCTCTGACGCGGAGAATACAAGAGAGAGTAAAAATGAAGAATAAATCAGGTAATTTTATATCACGCTATCTTCCGGCACTGATGCTGACAGGTG