Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 50.4 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 69.7 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 45.6 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 69.7 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 50.4 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 45.6 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 69.7 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 50.4 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 45.6 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 50.4 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 69.7 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 45.6 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 50.4 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 69.7 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 45.6 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 45.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 69.1 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 49.4 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 66.4 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01440 PMI_RS01440 39.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 42.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 43.2 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 830 47 6 848 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 725 46 10 817 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 665 41 13 835 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 0.0 590 39 11 807 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 7.29e-172 521 37 15 813 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46009 7.52e-100 334 29 27 875 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 1.92e-91 311 28 23 894 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P42915 7.2e-86 295 27 24 842 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 1.82e-84 292 29 28 827 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 1.18e-83 290 29 29 828 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 2.74e-81 283 28 24 851 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 1.98e-79 278 27 21 862 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 5.75e-79 276 27 25 822 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33129 2.69e-77 272 28 27 856 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45997 8.46e-73 259 28 22 846 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 1.4e-72 258 27 21 844 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 7.59e-71 253 27 21 844 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33408 4.36e-67 243 27 30 802 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P53517 9.55e-67 242 26 26 829 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33341 8.03e-65 236 26 30 827 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
Q56983 3.02e-62 229 26 26 822 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 3.02e-62 229 26 26 822 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P21647 7.15e-61 225 26 28 811 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P46000 1.49e-60 224 27 22 806 3 fasD Outer membrane usher protein FasD Escherichia coli
P46005 8.22e-57 213 26 26 823 3 aggC Outer membrane usher protein AggC Escherichia coli
P33388 6.62e-53 201 25 24 802 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P53513 6.13e-52 198 24 21 753 3 cssD Outer membrane usher protein CssD Escherichia coli
P53512 2.96e-51 197 24 24 776 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 1.11e-49 192 26 32 861 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P26949 3.23e-48 187 25 31 839 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33410 3.32e-44 176 24 24 801 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 5.27e-44 176 27 26 711 3 None Outer membrane usher protein CS3-2 Escherichia coli
P12050 1.65e-42 170 24 29 773 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 6.29e-39 159 24 27 797 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 8e-38 151 28 17 475 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q8X5K7 5.55e-37 146 32 9 328 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P45420 1.26e-26 120 24 31 783 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 3.79e-13 75 24 11 348 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.04e-12 74 24 11 348 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01285
Feature type CDS
Gene mrpC
Product MR/P fimbria usher protein MrpC
Location 312542 - 315157 (strand: 1)
Length 2616 (nucleotides) / 871 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042623 MR/P fimbria usher protein MrpC VF1233 Adherence

Protein Sequence

MVRSFKTVCLEKREKRKKHAIRPVAILIYLIVTGASSLSNSALANSDIEFNADILDLKDKQNIDLSDFSRAGYIMPGRYEFVVRINNNELPDIYNINYVVPADDPKGSEPCLPPELVRQLGLKPEWLDKIRFNDNQTCLDTSSIPGMTINASLGSGNLLLTIPQAYLEYSAPNWDPPSRWDDGISGILFDYNVNANVTDPAKGKQRQQVTGLGTLGANLGAWRFRADWQASYQHTTGIPQSTENSWKWNQYYLYRAIPQWEARFVMGETYSRSDIFDSFRFTGVHLATDDNMLPPNLRGYAPEVTGVAKTNAKVTISQQGRVIYETQVAPGPFRIQDINDAVSGKLDVRVEEQDGSVQEFQMDTASIPYLTRPGRVQYKFSAGKPSNIDHNTEGPVFGMGEFSWGVSNGWSLYGGSIVAGDYNALSAGIGRDLMAFGALSFDATHSWAKIPRDDKRYNGGSYRLSYSKRFEAINSQVTFAGYRFSERDFMTMDQYLERRYRDGNADNNKELYTIMFSKQFPDWGLSTYLNYSHQTYWNKPTNDNYNLSLAKSADIGRFKNINFSLSAFRNKFNGTNDNGVYMNVSMPWGDRATISYNTVINKSGNSHNVSYYDRIDDNSSYRVGAGVSSNGKPSADAYFMHYADAALVTASASHINGEYTSATLSLQGGATLTPKGGALHRVSRTGSTRLLIDTDGIANIPVKNFGAISHTNMFGKAVLPDINDYYRSSASIDLNRLPENVEALRSIQQLTLTEGAIGYRRFDVIEGQKAMAVIRLKDGTFPPFGASVTTEKGRELGIINDGGNVYLTGINTGDVLSVRWSGKEQCKVLIPTLVENVQISSLLLTCSDDGTATSTFNQREVSLPKTKFLSR

Flanking regions ( +/- flanking 50bp)

GCTGCGCTTTAAGCTGGAATACTATTAAATGGATCAGGGTTGGATAATTTATGGTTAGATCATTCAAAACCGTTTGTTTAGAGAAGCGAGAAAAGAGAAAAAAGCATGCTATTCGGCCTGTTGCTATATTGATCTATTTAATTGTTACTGGGGCATCCAGTCTTTCAAATTCAGCTTTAGCGAATAGCGATATTGAGTTTAATGCTGATATTTTAGATCTTAAAGATAAACAAAATATCGATTTATCTGATTTCTCTCGAGCTGGCTATATTATGCCAGGGCGCTACGAATTTGTTGTTCGTATAAATAATAATGAACTTCCCGATATCTACAACATTAATTATGTTGTACCTGCAGATGATCCCAAAGGAAGTGAACCTTGCTTACCTCCTGAATTAGTTCGTCAATTAGGACTAAAACCAGAGTGGCTTGATAAAATTCGTTTTAACGATAATCAAACTTGCCTTGATACATCATCTATTCCCGGAATGACAATAAATGCCAGTTTAGGTAGTGGTAATTTATTATTAACGATACCTCAAGCTTATTTGGAGTATTCAGCACCAAACTGGGATCCGCCTTCTCGTTGGGATGACGGTATTTCAGGGATACTTTTTGATTATAACGTCAATGCAAATGTGACTGATCCTGCTAAAGGAAAACAACGTCAGCAAGTGACGGGGTTAGGTACGTTAGGGGCGAACTTAGGTGCTTGGCGTTTTCGCGCTGATTGGCAAGCGAGCTACCAACATACGACAGGGATCCCTCAAAGTACAGAAAACAGCTGGAAATGGAATCAATACTATCTCTATAGAGCTATCCCTCAATGGGAAGCGCGCTTTGTCATGGGAGAGACTTACTCGCGCTCCGATATTTTTGATAGTTTCCGTTTTACCGGGGTTCATCTCGCAACTGACGACAATATGTTGCCACCTAATTTACGTGGATATGCGCCAGAAGTCACAGGTGTAGCAAAAACCAATGCCAAAGTGACAATTAGCCAACAGGGTCGAGTGATCTACGAGACGCAAGTTGCTCCAGGACCATTTCGTATTCAAGATATTAATGATGCCGTTAGCGGTAAATTAGATGTACGTGTCGAAGAGCAAGATGGCTCTGTACAAGAGTTTCAAATGGATACGGCAAGTATTCCTTATTTAACTCGACCAGGACGAGTGCAATATAAATTCTCGGCAGGTAAACCTTCTAATATTGACCATAATACCGAAGGCCCCGTTTTTGGTATGGGGGAATTTTCATGGGGGGTGAGTAACGGTTGGTCACTTTATGGGGGCTCAATTGTTGCGGGTGATTATAACGCCTTGTCTGCGGGTATCGGCCGTGACTTAATGGCTTTTGGTGCTCTCTCTTTTGATGCTACTCACTCTTGGGCAAAAATTCCTCGTGATGATAAGCGTTATAACGGTGGCTCTTATCGATTAAGTTATTCAAAACGTTTTGAAGCTATTAATAGCCAAGTCACCTTTGCTGGTTATCGCTTCTCAGAACGCGACTTTATGACCATGGATCAGTATTTAGAGCGTCGCTATCGCGATGGTAATGCTGATAATAACAAAGAACTTTATACCATTATGTTTAGTAAGCAATTTCCTGACTGGGGATTGAGTACTTACTTAAACTATAGTCACCAAACATATTGGAATAAGCCAACTAATGATAATTACAACTTATCGTTAGCGAAAAGCGCGGATATTGGTCGTTTTAAAAATATCAATTTTAGTCTCTCCGCTTTCCGTAATAAATTTAATGGCACCAATGATAATGGCGTTTATATGAATGTCAGTATGCCTTGGGGTGATCGTGCGACCATCAGTTACAACACTGTCATTAATAAGAGCGGTAACTCTCATAATGTCAGCTATTACGATCGAATTGATGACAATAGCAGTTATCGTGTTGGCGCTGGGGTAAGTAGCAATGGTAAACCTTCAGCCGATGCTTATTTTATGCATTATGCTGATGCGGCCTTAGTCACCGCCAGTGCAAGTCATATCAATGGTGAATATACCTCTGCCACTTTATCGCTACAAGGTGGTGCCACACTTACGCCGAAAGGTGGAGCATTACACCGCGTTAGTCGTACAGGTAGTACTCGCTTACTTATTGATACAGACGGTATCGCTAATATTCCCGTGAAGAATTTTGGTGCGATTTCCCATACCAATATGTTTGGTAAAGCGGTATTGCCAGATATTAATGATTACTACCGTAGTAGCGCGAGTATCGATCTTAATCGATTACCTGAAAATGTCGAAGCATTACGCTCAATTCAGCAATTAACCCTAACCGAAGGGGCGATTGGTTACCGTCGATTTGATGTTATCGAAGGGCAAAAAGCCATGGCGGTTATTCGGTTAAAAGATGGAACCTTCCCACCATTTGGTGCCAGTGTCACAACAGAAAAAGGGCGTGAGTTAGGCATCATTAATGATGGTGGAAATGTTTATCTAACCGGTATTAATACCGGGGATGTATTGAGTGTTCGTTGGAGTGGTAAAGAGCAGTGCAAAGTACTTATTCCAACATTGGTGGAGAATGTGCAAATTTCATCACTGTTATTGACCTGTAGTGATGATGGCACAGCAACCTCTACTTTCAATCAAAGAGAAGTCTCCTTACCTAAAACGAAGTTTCTATCTCGTTAAGGTTAAGGAACAGGAAATAAAGATAAAAACAACTTCAGACAAAGAGTAAT