Orthogroup:group_3647


Homologs in group_3647

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS08460 F4V73_RS08460 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of group_3647 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3647 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3647

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3647.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 4

Product

# Product Occurence
1 fimbria/pilus outer membrane usher protein 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3188 4 NW Cell motility (N)
Extracellular structures (W)		 Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07347 4 outer membrane usher protein Two-component system
Pertussis		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00577 4 Outer membrane usher protein
PF13953 4 PapC C-terminal domain
PF13954 4 PapC N-terminal domain

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
F1 capsule-anchoring protein 1
Fimbrial usher domain-containing protein YdeT 2
Outer membrane usher protein AfaC 1
Outer membrane usher protein AggC 1
Outer membrane usher protein CS3-2 1
Outer membrane usher protein CssD 2
Outer membrane usher protein FaeD 1
Outer membrane usher protein FanD 1
Outer membrane usher protein FasD 1
Outer membrane usher protein FimC 1
Outer membrane usher protein FimD 2
Outer membrane usher protein FocD 1
Outer membrane usher protein HifC 3
Outer membrane usher protein HtrE 1
Outer membrane usher protein LpfC 1
Outer membrane usher protein MrkC 1
Outer membrane usher protein MyfC 1
Outer membrane usher protein PapC 1
Outer membrane usher protein PefC 1
Outer membrane usher protein PmfC 1
Outer membrane usher protein PsaC 2
Outer membrane usher protein SefC 1
Outer membrane usher protein SfmD 1
Outer membrane usher protein YehB 1
Outer membrane usher protein YraJ 1
Probable outer membrane usher protein ElfC 2
Probable outer membrane usher protein LpfC 1
Probable outer membrane usher protein LpfC' 1
Putative outer membrane usher protein YfcU 1
Putative outer membrane usher protein YqiG 1
Uncharacterized outer membrane usher protein YbgQ 1
Uncharacterized outer membrane usher protein YhcD 1

Protein length

Min length 847
Max length 904
Mean length (sd) 863.0 (27.4)
Median length 850.5

Protein length distribution