Homologs in group_3446

Help

4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14595 FBDBKF_14595 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_15400 EHELCC_15400 100.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_15930 NLDBIP_15930 100.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_15910 LHKJJB_15910 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC

Distribution of the homologs in the orthogroup group_3446

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3446

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 1.9e-111 362 30 15 819 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 1.01e-106 350 29 18 852 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 1.85e-101 336 30 22 869 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 1.89e-99 330 29 15 794 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P77468 1.52e-95 320 28 20 860 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P75857 4.19e-94 316 28 19 862 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.04e-92 311 28 20 864 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P26949 3.87e-76 266 27 23 806 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P53517 5.74e-75 264 28 28 852 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33388 1.06e-70 251 26 25 849 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 4.38e-67 241 25 27 862 3 aggC Outer membrane usher protein AggC Escherichia coli
Q56983 1.7e-63 231 27 28 832 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.7e-63 231 27 28 832 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53513 2.7e-62 228 22 16 792 3 cssD Outer membrane usher protein CssD Escherichia coli
P33408 2.1e-61 226 26 21 727 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P53512 4.79e-61 224 22 16 753 3 cssD Outer membrane usher protein CssD Escherichia coli
P30130 7.89e-59 219 34 9 435 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P30130 8.96e-33 139 32 5 264 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33129 1.09e-58 218 26 22 788 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45998 1.75e-58 217 26 18 721 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 3.78e-58 216 26 18 792 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 3.85e-56 210 25 18 792 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P77196 6.27e-53 201 24 26 864 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P75750 1.29e-52 200 25 22 810 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P33410 1.41e-52 200 26 18 717 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P21647 1.24e-51 197 25 17 703 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q8X5K8 3.19e-51 190 28 11 495 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P46000 6.73e-51 195 23 31 861 3 fasD Outer membrane usher protein FasD Escherichia coli
P15484 4.19e-49 190 24 19 702 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33341 7.16e-48 186 25 20 768 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P53514 2.77e-42 169 25 30 739 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P37868 5.09e-41 165 24 22 769 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K7 7.25e-41 157 32 8 359 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P07110 3.82e-31 134 28 15 455 1 papC Outer membrane usher protein PapC Escherichia coli
P07110 1.15e-08 62 29 6 203 1 papC Outer membrane usher protein PapC Escherichia coli
P76137 1.17e-29 125 34 2 185 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
Q7DBJ9 1.37e-29 125 34 2 185 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76655 4e-29 128 28 7 334 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P76655 2.06e-09 65 28 5 164 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P12050 3.46e-25 115 22 25 649 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 8.15e-23 108 24 25 710 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.71e-21 103 21 21 662 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_15030
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 69272 - 71674 (strand: 1)
Length 2403 (nucleotides) / 800 (amino acids)

Contig

Accession ZDB_694
Length 115897 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3446
Orthogroup size 5
N. genomes 5

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MQLKAPYFFLLAVVIVFPPVTVFAAPYFNPAALGLDGDDPVMDPAQFQYLRERQFQEEGRYFVAVTVNQQAVSGQWLEFRYHPQQKRLLPWVNRRQWLIWGLRPDASPAFAETENTAPVADITALVSGVSLSFDSARQSLDITIPQRFFLTEAQRAADTSLWEPGITAFMLNYDYRFSRDSNSFSQRTGHTLLLQSGVNAGDWRLRHHSRAEHREGKLTWQSERLWMYRAIASRRSELQLGELFSGDVLFDSRAFRGIRLASQSDMYPLNQQGYAPVIRGITGQSAELTIRQQGMTIRRETLPAGEFVIDDLNTSFQGTELDVTIEEADGTVQRFTQHGTSVPVMQREGRLSYTLDTGKYRGNRNNNKDLFVKSTAAYGINSVLTLYGGGYAAQHALSSGVGAGVNMGAAGGVSADILMRHTTAKHYPRYRLNYQKFFPLAGTLVNTGAAHEQQSRQWQVRLLQPLPGDNGTLSAGYHYNRTGHDGRGYRAMISRDAGYSGHIGRVHYGVNAQYRTGGHFRKADKRVSVALSVPLDFAGQQARSHFHYHQRAGKASLQTSVNGLLGDEQRLGYSVTHSYQQQGAAHYRGAELRWRHDLADIRGRINHSQGHNTLNGDIQGGLIIHGDGITLSRPLGETNGLADTVGTGGIRVASRAAAQTDSAGFSVIPQLSHYHQNVIRIDPETLPDNADADDPVVQVIPSKGALVPVRFAVNTGYRVIYALRTAQGPVPFAARVKVKKADGSSVSGITGEDGEVYLSGLPAQGHLQAVWGKGMHEQCGADFTVPEDQQGLITLPLICR

Flanking regions ( +/- flanking 50bp)

TTTTGGCGGGATTATTTCGAAACCTGTTGTTTTTGATAAATAATATTATTATGCAATTGAAAGCACCTTATTTTTTTCTTCTGGCAGTGGTGATCGTTTTTCCTCCGGTAACCGTTTTTGCTGCACCTTATTTTAATCCGGCGGCGCTTGGTCTGGACGGAGATGATCCGGTGATGGATCCTGCACAGTTTCAGTATTTGCGGGAACGGCAATTTCAGGAAGAAGGCCGTTACTTCGTGGCTGTAACTGTCAATCAGCAGGCAGTCAGTGGTCAGTGGCTGGAGTTTCGTTATCATCCGCAGCAAAAAAGATTGCTGCCATGGGTGAACCGCAGGCAATGGCTGATATGGGGATTACGGCCGGATGCATCGCCGGCATTTGCAGAAACAGAAAATACAGCGCCGGTTGCGGATATTACTGCGCTGGTCAGCGGGGTCTCGCTGAGTTTTGACTCCGCGCGGCAGTCGCTGGATATTACTATCCCGCAACGTTTTTTTCTGACAGAAGCACAGCGGGCCGCAGATACTTCGTTATGGGAACCGGGTATTACTGCATTTATGCTCAATTATGATTATCGCTTTTCGCGGGACAGTAACAGCTTCAGTCAGCGTACCGGACATACTCTTTTGCTGCAAAGTGGTGTTAATGCGGGGGACTGGCGGTTGCGGCATCACAGCAGGGCGGAACACCGTGAGGGTAAACTGACATGGCAGTCAGAGCGGTTGTGGATGTACCGTGCCATTGCTTCCCGGCGCAGCGAGTTACAGCTGGGGGAATTGTTCAGCGGGGATGTGTTGTTTGACAGCCGAGCGTTCAGGGGGATCCGGCTGGCTTCACAAAGTGATATGTATCCGCTGAATCAGCAGGGTTATGCACCGGTTATCCGCGGAATAACCGGTCAGAGTGCAGAACTGACTATCAGGCAGCAGGGAATGACTATCCGCCGTGAAACACTACCTGCCGGTGAATTTGTTATTGATGATCTGAATACGTCTTTTCAGGGAACAGAACTGGATGTCACCATTGAGGAGGCGGACGGCACTGTACAGCGTTTTACACAGCACGGAACCTCAGTTCCGGTTATGCAGCGGGAGGGCCGGCTCAGCTACACGCTGGATACAGGAAAATACAGAGGAAACAGAAATAATAACAAAGACCTGTTTGTGAAAAGTACGGCAGCATACGGCATTAATTCAGTCCTGACACTGTACGGTGGTGGTTATGCGGCACAGCATGCCCTGAGCAGCGGTGTGGGGGCCGGTGTCAATATGGGCGCGGCAGGCGGGGTGTCTGCTGATATTCTGATGCGGCATACAACAGCAAAGCATTATCCGCGTTACCGGCTGAATTATCAGAAATTTTTTCCGCTGGCCGGAACATTGGTGAATACAGGGGCTGCACATGAGCAACAATCAAGGCAATGGCAGGTCCGGTTGCTGCAACCGCTGCCGGGGGATAACGGTACGCTGTCGGCAGGCTATCACTATAACCGCACAGGCCATGACGGGCGCGGATACCGGGCGATGATTAGCAGGGATGCCGGCTATTCCGGTCACATCGGCCGGGTACATTACGGTGTGAATGCACAGTACCGTACCGGCGGGCATTTTCGGAAAGCAGATAAACGGGTGTCTGTTGCGTTGTCGGTGCCGCTGGATTTTGCCGGACAACAAGCCCGCAGTCATTTTCATTACCACCAGCGGGCAGGAAAAGCTTCTCTGCAAACATCCGTGAATGGTTTGCTCGGAGATGAACAACGTCTCGGGTATTCAGTTACACACAGTTATCAGCAGCAGGGTGCTGCACATTACCGCGGGGCGGAGCTGCGCTGGCGTCACGACCTGGCCGATATCCGGGGACGTATTAATCACAGTCAGGGACACAATACCCTGAACGGGGATATACAGGGCGGGCTGATTATTCACGGTGACGGTATCACATTGTCACGTCCGCTGGGTGAAACCAACGGGCTGGCAGATACCGTCGGTACCGGGGGGATCCGTGTGGCCTCAAGGGCAGCGGCGCAGACTGACAGTGCGGGGTTCAGTGTTATTCCGCAACTGAGTCATTATCATCAGAATGTTATCCGTATCGACCCCGAAACCCTGCCGGATAATGCGGATGCGGATGATCCTGTCGTACAGGTGATCCCGTCAAAAGGGGCGCTGGTGCCGGTTCGTTTTGCAGTGAATACCGGTTATCGCGTGATTTATGCACTGCGGACTGCACAAGGCCCGGTACCGTTCGCCGCACGGGTGAAGGTGAAAAAAGCAGATGGCAGCAGCGTCAGCGGTATTACCGGTGAGGACGGGGAAGTGTATCTCAGCGGGTTACCGGCTCAGGGGCATTTACAGGCTGTCTGGGGGAAAGGAATGCATGAGCAGTGCGGGGCAGATTTCACTGTCCCGGAAGATCAGCAGGGACTGATAACCCTCCCTCTGATATGCCGGTAAAGGAGCAGCAATGTTTACTCAGATCAGAACACTATGCCGGGCAGGTTTTC