Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 24.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 20.8 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 32.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 27.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 26.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 25.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 18.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 26.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 2.66e-74 262 25 23 841 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 5.79e-74 261 25 21 831 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P42915 1.06e-69 249 26 20 782 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P46009 1.68e-65 238 24 21 819 3 focD Outer membrane usher protein FocD Escherichia coli
P75857 3.33e-64 234 24 19 817 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 3.98e-62 228 24 19 817 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33408 7.75e-62 227 24 23 811 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 1.78e-55 208 24 20 813 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.78e-55 208 24 20 813 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33388 5.38e-55 207 27 29 800 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 6.17e-55 207 25 28 850 3 aggC Outer membrane usher protein AggC Escherichia coli
P37924 1.61e-51 197 23 19 819 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 2.2e-49 191 23 20 871 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P26949 1.43e-48 188 24 22 826 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33129 2.63e-47 184 25 30 816 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P53517 4.55e-45 177 21 24 843 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33397 5.18e-45 177 24 25 848 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P15484 8.54e-45 177 25 19 712 3 None Outer membrane usher protein CS3-2 Escherichia coli
P45997 1.14e-43 173 23 26 849 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 7e-43 171 22 26 850 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 4.31e-37 153 22 22 784 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P53512 7.07e-36 149 23 20 768 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 7.89e-36 149 23 21 775 3 cssD Outer membrane usher protein CssD Escherichia coli
P33341 1.68e-35 148 23 24 800 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P53514 1.19e-34 145 25 32 796 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
Q8X5K8 9.31e-34 139 24 11 401 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P76655 3.6e-32 137 24 31 777 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
Q7DBJ9 6.8e-31 129 27 8 358 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P75750 3.19e-30 131 27 17 499 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46000 1.21e-29 129 21 24 802 3 fasD Outer membrane usher protein FasD Escherichia coli
P76137 1.82e-29 124 26 8 358 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P77196 2.37e-29 129 22 31 817 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P33410 9.68e-29 127 21 22 786 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P07110 2.74e-27 122 22 29 799 1 papC Outer membrane usher protein PapC Escherichia coli
P12050 3.37e-25 115 25 25 679 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 4.94e-25 111 24 7 335 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P45420 2.12e-17 90 22 30 734 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P37868 2.46e-17 90 21 27 737 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P06970 3.69e-14 80 24 13 366 3 faeD Outer membrane usher protein FaeD Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05765
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1258043 - 1260436 (strand: -1)
Length 2394 (nucleotides) / 797 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MIKLSPISLLLLFTPYVYANALYLQAIENHNGNIDFSLLLNENFLEGTYNITIYINNNKKQNSEISFKNKNNNLTPIITLFDLKQWGINTNYYEPLKNKLDNDIVDYDLLKKLFNIKLEINKQSIYFKVPLIAIEKNTSYSKEKLDDGDNAAFIKYNYQGHYYKQNSLNGQHIHNLQLYNGINLFAWRYRQDLNYNNNNSFSINQQYVYRTLRNINSILTMGDFYAYSPNLNTYKILGVQINSDNAMKDGSLVGYAPIISETAYTYAEVSIEQNGETLYSTSVPPGPFTLNNLPSLGTNGELVLIIKEENGEVRKKKIWNYSSQYLLRKNQWNYYYTMGLVNNPQKRQFPSNKKKELLTQLNLSYGVSNYLTTMIGAEKKGDDIKALIGNTLGLNILGIVSLENAWIREKYHQQYQSNKINYQKVFSMENTTISLNSSFYFRFKENYAVNKEYKKYDLGFHFSQSLNNNIALTLGYNIATYYHSKEKSQRLFINTSSNYKKLSYSLELENSKDQYSNNNQLSIFLNYPIGQDLSHWATARINYDNREKYFHENISFSGNTLENNRLNYNLDFSKNNKERLDSSMKINYLSRIAKLNINSRFNKDSYSLGYGLNGGIVFHNGGITLAQDLNDSFAILNFAGAKKVKIIGKPTIESDRRGYLIIPNLTSYHNNKFHIDAKSLDYNYNIDNYSYHLIPTKGAIIAKNIKVTKGESALFTFHQNIPFGATAYVKNSDGTLSDISYVNEDNKLYISNLPISGKIFVKWGSSNKQQCSFNYQLNDNEKQNRIYFKTVNCIKEE

Flanking regions ( +/- flanking 50bp)

TTTGGTAATGAAGTTAATATCAACATAAAAAATAGCGAATAGTATTAATTATGATAAAGTTATCTCCTATTTCTTTACTCTTATTATTTACGCCCTATGTATATGCAAATGCACTTTACTTACAAGCAATTGAAAACCACAATGGAAATATTGATTTTTCACTCTTGCTTAATGAAAATTTTCTCGAAGGAACCTATAACATAACAATTTATATAAATAACAATAAAAAACAAAATTCTGAGATATCATTTAAAAACAAAAACAATAACTTAACTCCAATAATAACTCTATTTGATTTAAAACAATGGGGAATAAACACCAATTATTACGAGCCTTTAAAAAATAAGTTAGACAACGATATCGTTGACTATGATTTATTAAAAAAATTATTTAATATAAAATTAGAAATTAACAAACAGTCGATTTACTTTAAAGTACCATTAATTGCGATAGAAAAAAACACTTCATATTCCAAAGAAAAATTGGATGATGGTGATAATGCTGCTTTCATTAAATACAACTATCAAGGCCATTATTATAAACAAAATAGTTTAAATGGACAACACATACATAACCTACAGCTATATAATGGAATTAATTTATTTGCATGGCGTTATCGTCAAGATCTAAACTATAATAATAATAATTCTTTTTCTATAAACCAGCAATATGTATATAGGACACTTAGAAATATTAATTCCATTTTAACTATGGGTGATTTCTATGCTTATTCTCCTAACTTAAACACTTATAAAATACTAGGCGTGCAAATCAATAGCGATAATGCAATGAAAGATGGCTCCCTAGTAGGTTATGCACCCATTATAAGTGAAACCGCCTATACCTATGCAGAAGTTAGCATTGAGCAAAATGGAGAAACACTATATAGCACATCTGTACCACCTGGGCCATTTACTCTTAATAACCTTCCCTCTTTAGGTACAAATGGTGAATTAGTATTAATTATAAAAGAAGAAAATGGCGAAGTAAGAAAGAAGAAAATCTGGAATTATTCTTCACAGTATTTATTAAGAAAGAACCAATGGAATTATTACTATACTATGGGTTTAGTAAACAATCCTCAAAAAAGACAGTTTCCTTCTAATAAGAAAAAAGAACTATTAACTCAATTGAATTTAAGCTATGGAGTGAGCAATTATTTAACGACAATGATAGGAGCTGAAAAAAAAGGAGATGATATTAAAGCACTTATTGGAAATACCCTAGGATTAAATATCCTGGGTATAGTCTCATTAGAAAACGCTTGGATAAGAGAGAAATATCATCAACAATATCAGTCCAATAAGATTAATTACCAAAAAGTATTTTCTATGGAAAATACAACTATTTCATTAAACTCATCATTCTACTTTAGATTTAAAGAGAATTATGCTGTAAATAAAGAATATAAGAAATATGATTTAGGATTTCACTTTTCACAATCATTAAATAATAATATTGCTTTAACGTTGGGGTATAATATTGCAACCTATTATCACTCAAAAGAAAAAAGCCAACGACTTTTTATTAATACTAGTTCAAATTATAAAAAACTTTCCTATTCATTAGAGCTAGAGAATAGCAAAGATCAGTATAGCAATAATAATCAATTATCAATTTTTTTAAATTACCCTATTGGTCAAGATCTCTCTCATTGGGCAACAGCAAGGATCAATTATGATAATAGAGAAAAATATTTTCATGAGAATATTTCATTTAGTGGAAATACATTAGAAAATAATCGGTTAAATTATAACCTTGATTTTTCTAAAAATAATAAAGAACGCTTAGATTCATCAATGAAAATTAATTATTTAAGTAGGATAGCCAAACTAAATATAAACTCTCGATTTAATAAAGATAGTTATTCTTTAGGCTATGGACTCAATGGCGGCATTGTGTTTCATAATGGAGGAATAACGTTAGCCCAAGATCTAAATGATAGTTTTGCTATCCTAAATTTTGCAGGTGCTAAGAAAGTAAAAATAATAGGAAAGCCAACAATAGAATCAGACCGAAGAGGTTATTTAATCATTCCTAATTTAACTAGTTATCATAACAATAAGTTCCACATTGATGCAAAATCATTAGATTATAATTATAATATTGATAATTATAGCTATCATTTAATTCCTACTAAAGGAGCTATTATTGCAAAAAATATTAAGGTAACTAAAGGAGAAAGTGCTTTATTTACATTTCACCAAAACATTCCTTTTGGTGCAACAGCCTATGTGAAAAATTCTGATGGCACCCTATCCGATATATCCTATGTAAATGAAGATAATAAATTATATATTTCTAATTTACCTATTTCAGGAAAGATTTTTGTAAAATGGGGAAGTTCCAACAAACAACAGTGCTCATTTAACTATCAATTAAATGATAATGAAAAACAAAATAGAATTTATTTTAAAACTGTAAATTGCATTAAAGAGGAATAATATATAAAAATGAAATACATTATTATTTTAATTTATTTACTCTCATTCCA