Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 41.1 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 40.5 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 37.4 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 40.5 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 41.1 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 37.4 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 40.5 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 41.1 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 37.4 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 41.1 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 40.5 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 37.4 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 41.1 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 40.5 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 37.4 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 37.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 39.6 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 40.4 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 38.7 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 39.9 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS09270 PMI_RS09270 38.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 41.9 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07110 0.0 645 44 18 847 1 papC Outer membrane usher protein PapC Escherichia coli
P77196 0.0 589 38 15 858 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 0.0 566 37 17 830 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 3e-172 521 37 14 818 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 7.2e-155 476 34 16 834 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46009 2.17e-87 299 28 25 863 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 1.14e-84 292 27 21 839 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33129 2.69e-79 277 27 25 878 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P43662 7.1e-74 261 28 33 847 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 5.07e-71 253 27 25 837 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
Q8XDD1 6.42e-69 248 25 22 814 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 9.79e-69 247 26 24 814 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P33397 8.24e-68 244 26 25 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33408 9.7e-68 244 25 24 842 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P37924 3.54e-67 243 25 24 868 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 4.52e-67 243 25 25 851 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P45997 5.16e-67 242 27 29 848 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.17e-65 238 25 23 839 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 6.44e-62 227 26 26 795 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33341 3.87e-59 219 24 23 810 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P26949 1.31e-58 218 26 26 848 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 1.46e-58 218 25 23 831 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.46e-58 218 25 23 831 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53517 5.64e-56 211 24 23 834 3 afaC Outer membrane usher protein AfaC Escherichia coli
P53512 3.1e-54 205 24 28 808 3 cssD Outer membrane usher protein CssD Escherichia coli
P21647 5.48e-54 204 24 27 809 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P53513 2.65e-52 199 24 30 799 3 cssD Outer membrane usher protein CssD Escherichia coli
P15484 2.48e-50 194 28 29 751 3 None Outer membrane usher protein CS3-2 Escherichia coli
P46000 6.29e-50 192 25 22 828 3 fasD Outer membrane usher protein FasD Escherichia coli
P37868 2.43e-46 181 24 25 828 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46005 1.2e-43 174 24 31 858 3 aggC Outer membrane usher protein AggC Escherichia coli
P12050 3.46e-34 144 23 27 765 3 fanD Outer membrane usher protein FanD Escherichia coli
P33410 9.11e-31 133 23 32 814 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P45420 3.16e-30 131 25 33 790 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q8X5K8 8.53e-30 127 24 18 488 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q8X5K7 5.99e-29 122 28 12 360 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 2.05e-27 122 23 24 765 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 8.3e-20 95 30 8 229 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.4e-16 86 29 8 230 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01440
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 354355 - 356877 (strand: 1)
Length 2523 (nucleotides) / 840 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MVNSMIFELNQLRQVVLLTMSISVFSAYATEFNIDVLDAEDIQNIDMSQFSIAGYVPPGDYVLTVFVNGQRLGAPRDITVLEQKTQTQAICIPADLLDSIGLKESVKPKVTVYPNSQCLDLSVLKGMQTVIDLPTLSLKITIPQLWMEYRDPYWTPPALWEEGINGAFLDYSANVSITEEKEGDKRTYLSTNGTAGINLGVWRFRGDYSAIYQKKRGGRQSQEIHDFDFSRLYGFTSLKKLASILTIGENYFYSDVFESWQYSGISLESDDRMLPPKLVGYAPEITGVADTNATVIVRSQNRVLLETTVPPGPFRIQTLDSGVRGILDITIREENGEEKKFSISTASLPYLTRPGRLIYKLVMGKTRYDGHHLTGKPVFSGEFSYGLSNAWSLYGGTQFNSDYQATAIGIGRDLFSFGALSLDITQSFARFTDKKIKGRSYRLNYAKSFDALRTDITFAGYRFAARDYRTLTQFMDQRRTGYDIRSPKENYQIYINKYFDNFNISLNYQYSTYWQDKPQTQYGLYASTNISIPMLSQQNANISLSATRTERDSGYQDDAINLYLTIPLYKGHSISFSESYSRIGKSNQYSHRASYSGYSDRDNYSLNVGYSHGEEIDSQSSISGYYSRDFSQANLSANASYVPQQYRSVGASINSGITATTQGIALHRSANGDTRLMIETPGVGDVPLDSGVIKTNHFGLAVIPNVNSYRKSTVSINTSQLPENIETLESTTDITLTKGAIGYRSLSVMKGEKLFAIISLNDGKKPPFGASVRNADNRELGIVGEDGVTWLVGISSKEKLSVYWAGKKQCELSLPEDLASPTSMLLLPCSSPTISKITEN

Flanking regions ( +/- flanking 50bp)

ATTTTCTTAGGCTCTAATGAATAAAGTATTTTATTACCTCTAGGATGGGGATGGTGAATAGTATGATATTTGAACTCAATCAGTTAAGGCAAGTCGTATTATTGACAATGAGTATTAGTGTGTTTTCTGCTTATGCTACAGAATTCAATATCGATGTGTTAGATGCAGAAGATATACAAAATATCGATATGAGCCAATTTTCCATTGCTGGCTATGTTCCCCCTGGTGATTATGTATTAACAGTTTTTGTTAATGGACAACGTTTAGGCGCACCTCGCGATATCACGGTTTTAGAGCAAAAAACGCAAACACAAGCTATCTGTATACCTGCTGACTTACTTGATTCTATTGGTTTAAAAGAGTCTGTAAAACCAAAAGTGACTGTATACCCTAATAGTCAATGCCTTGATCTTTCTGTTTTGAAAGGAATGCAAACAGTTATTGATCTCCCAACACTATCACTCAAAATAACGATCCCCCAATTATGGATGGAATATAGAGATCCTTATTGGACTCCTCCTGCATTATGGGAAGAAGGAATTAATGGTGCTTTCCTTGATTACAGCGCTAATGTTTCAATCACCGAAGAAAAAGAGGGGGATAAACGTACTTATTTGTCCACTAATGGTACTGCGGGTATTAATTTAGGTGTTTGGCGCTTTCGTGGTGATTATAGTGCCATCTATCAAAAAAAGCGGGGTGGCAGACAATCACAAGAAATACACGATTTTGATTTTAGCCGTCTTTATGGTTTTACCTCCTTGAAAAAATTGGCTTCAATTTTAACTATTGGAGAAAATTATTTTTACTCAGATGTTTTTGAATCATGGCAATACAGCGGTATTTCATTAGAAAGTGATGATCGCATGCTACCTCCCAAATTAGTGGGGTATGCACCAGAGATCACAGGTGTAGCAGATACCAATGCAACAGTGATTGTTCGTAGCCAAAATCGAGTGCTCCTTGAAACAACAGTACCCCCTGGACCATTTCGTATTCAAACTTTAGATAGTGGTGTTCGAGGGATACTCGATATCACAATCCGTGAAGAAAATGGAGAAGAGAAAAAATTTAGTATCAGTACTGCCTCATTACCTTATTTAACTCGCCCTGGCCGTCTGATCTATAAATTAGTGATGGGTAAAACTCGTTATGATGGACATCATTTAACAGGTAAACCCGTATTCAGTGGTGAATTCTCCTATGGTCTATCTAATGCTTGGTCGTTATATGGGGGAACACAATTTAACAGCGATTATCAGGCAACGGCGATTGGTATAGGACGGGATCTATTTTCTTTTGGGGCATTATCACTTGATATTACTCAGTCTTTTGCACGTTTTACTGATAAAAAAATAAAAGGGCGTTCTTATCGTCTTAATTATGCAAAATCTTTTGATGCACTACGCACGGATATTACTTTTGCTGGGTATCGATTTGCTGCTAGAGATTATCGCACATTAACTCAGTTTATGGATCAACGTCGTACTGGTTATGATATTCGCTCTCCAAAAGAGAACTATCAAATTTATATAAACAAGTATTTTGATAATTTTAATATATCACTAAATTATCAATATAGTACCTATTGGCAAGATAAACCTCAAACACAATATGGTTTATACGCAAGTACTAATATCAGTATTCCAATGTTATCTCAGCAAAATGCGAATATATCTTTATCAGCAACCAGAACTGAACGAGATAGTGGTTATCAAGATGATGCTATTAATCTGTATTTAACAATACCATTATATAAAGGCCATAGCATTTCATTTTCTGAATCATATTCTCGTATTGGTAAAAGTAATCAATATAGCCATAGAGCAAGTTATAGTGGTTATAGTGATCGCGATAATTATAGTCTGAATGTGGGCTATAGTCATGGAGAAGAAATTGATAGCCAATCAAGTATCAGTGGTTATTATTCTCGCGACTTTTCTCAAGCTAACTTATCTGCTAACGCAAGTTATGTACCACAACAATATCGTAGTGTTGGTGCATCAATTAACAGTGGTATTACAGCTACAACTCAAGGTATTGCGTTGCATCGTTCAGCTAATGGTGATACTCGTTTAATGATTGAAACACCAGGGGTTGGTGATGTACCTCTAGATAGTGGCGTTATCAAAACTAATCACTTTGGACTTGCAGTTATTCCTAATGTTAATAGTTATCGTAAATCTACGGTTTCTATTAATACCAGTCAGCTACCTGAAAATATAGAAACGCTAGAATCAACAACTGATATTACCTTGACTAAAGGGGCGATAGGGTATCGCAGTTTATCAGTAATGAAAGGGGAAAAGTTGTTTGCCATTATATCCCTAAATGATGGTAAGAAACCGCCTTTTGGGGCAAGTGTACGTAATGCGGATAATCGTGAGTTGGGTATTGTTGGTGAAGATGGTGTGACATGGCTAGTAGGCATTTCATCAAAAGAAAAACTATCTGTTTATTGGGCAGGGAAAAAACAATGTGAGTTGTCACTTCCTGAAGATTTAGCATCGCCAACTAGCATGTTATTGCTACCTTGCTCTTCACCTACTATATCAAAAATTACAGAAAATTAATTATTAATTAAATGTTTTATATTGTGAGGTTAGTTATGTTTAATTTTAGT