Orthogroup:group_32


Homologs in group_32

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15 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03650 FBDBKF_03650 Morganella morganii S1 fdhF formate dehydrogenase subunit alpha
FBDBKF_07405 FBDBKF_07405 Morganella morganii S1 fdhF formate dehydrogenase subunit alpha
EHELCC_03565 EHELCC_03565 Morganella morganii S2 fdhF formate dehydrogenase subunit alpha
EHELCC_06885 EHELCC_06885 Morganella morganii S2 fdhF formate dehydrogenase subunit alpha
NLDBIP_03565 NLDBIP_03565 Morganella morganii S4 fdhF formate dehydrogenase subunit alpha
NLDBIP_07210 NLDBIP_07210 Morganella morganii S4 fdhF formate dehydrogenase subunit alpha
LHKJJB_06745 LHKJJB_06745 Morganella morganii S3 fdhF formate dehydrogenase subunit alpha
LHKJJB_09395 LHKJJB_09395 Morganella morganii S3 fdhF formate dehydrogenase subunit alpha
HKOGLL_04185 HKOGLL_04185 Morganella morganii S5 fdhF formate dehydrogenase subunit alpha
HKOGLL_09580 HKOGLL_09580 Morganella morganii S5 fdhF formate dehydrogenase subunit alpha
F4V73_RS08500 F4V73_RS08500 Morganella psychrotolerans fdhF formate dehydrogenase subunit alpha
F4V73_RS11220 F4V73_RS11220 Morganella psychrotolerans fdhF formate dehydrogenase subunit alpha
PMI_RS11765 PMI_RS11765 Proteus mirabilis HI4320 - FdhF/YdeP family oxidoreductase
PMI_RS14730 PMI_RS14730 Proteus mirabilis HI4320 fdhF formate dehydrogenase subunit alpha
PMI_RS17800 PMI_RS17800 Proteus mirabilis HI4320 fdhF formate dehydrogenase subunit alpha

Distribution of group_32 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_32 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_32

Orthogroup content: 15 members

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This page summarizes the annotation of all members of the orthologous group group_32.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fdhF 14
2 - 1

Product

# Product Occurence
1 formate dehydrogenase subunit alpha 14
2 FdhF/YdeP family oxidoreductase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0243 1 C Energy production and conversion (C) Anaerobic selenocysteine-containing dehydrogenase
COG3383 14 R General function prediction only (R) Predicted molibdopterin-dependent oxidoreductase YjgC

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00384 15 Molybdopterin oxidoreductase
PF01568 15 Molydopterin dinucleotide binding domain
PF04879 14 Molybdopterin oxidoreductase Fe4S4 domain

Annotations of the 258 SwissProt hits

Annotation Number of occurrences
Acetylene hydratase 1
Arsenate respiratory reductase molybdopterin-containing subunit ArrA 2
Arsenite oxidase subunit AioA 2
Assimilatory nitrate reductase 1
Assimilatory nitrate reductase catalytic subunit 1
Biotin sulfoxide reductase 2
Chlorate reductase subunit alpha 1
Dimethyl sulfoxide reductase DmsA 2
Dimethyl sulfoxide/trimethylamine N-oxide reductase 2
Dimethylsulfide dehydrogenase subunit alpha 1
Dopamine dehydroxylase 1
Formate dehydrogenase 2 subunit alpha (cytochrome c-553) 1
Formate dehydrogenase H 1
Formate dehydrogenase major subunit 1
Formate dehydrogenase subunit alpha 3
Formate dehydrogenase, nitrate-inducible, major subunit 1
Formate dehydrogenase-O major subunit 1
Iodate reductase subunit IdrA 1
Menaquinone reductase, molybdopterin-binding-like subunit 1
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial 2
NADH-quinone oxidoreductase chain 3 1
NADH-quinone oxidoreductase subunit G 15
NADH-quinone oxidoreductase subunit G 2 1
NADH-ubiquinone oxidoreductase 75 kDa subunit 1
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial 10
NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial 2
NADPH-Fe(3+) oxidoreductase subunit alpha 2
Nitrate reductase 5
Nitrate reductase alpha chain 1
Nitrate reductase alpha subunit 2
Perchlorate reductase subunit alpha 1
Periplasmic nitrate reductase 134
Periplasmic nitrate reductase 1 1
Periplasmic nitrate reductase 2 1
Polysulfide reductase chain A 1
Probable dimethyl sulfoxide reductase chain YnfF 1
Probable oxidoreductase YjgC 1
Probable oxidoreductase YoaE 1
Probable oxidoreductase YyaE 1
Protein YdeP 4
Putative dimethyl sulfoxide reductase catalytic subunit A 1
Putative dimethyl sulfoxide reductase chain YnfE 1
Putative formate dehydrogenase MW2229 1
Putative formate dehydrogenase SA2102 1
Putative formate dehydrogenase SAB2186c 1
Putative formate dehydrogenase SACOL2301 1
Putative formate dehydrogenase SAOUHSC_02582 1
Putative formate dehydrogenase SAR2393 1
Putative formate dehydrogenase SAS2201 1
Putative formate dehydrogenase SAUSA300_2258 1
Putative formate dehydrogenase SAV2309 1
Putative formate dehydrogenase SH0748 1
Putative formate dehydrogenase SSP0601 1
Putative formate dehydrogenase YrhE 1
Pyrogallol hydroxytransferase large subunit 1
Respiratory nitrate reductase 1 alpha chain 1
Respiratory nitrate reductase 2 alpha chain 1
Respiratory nitrate reductase subunit alpha 1
Selenate reductase subunit alpha 1
Sulfite dehydrogenase subunit A 1
Thiosulfate reductase molybdopterin-containing subunit PhsA 1
Trimethylamine-N-oxide reductase 10
Trimethylamine-N-oxide reductase 1 3
Trimethylamine-N-oxide reductase 2 3
Tungsten-containing formylmethanofuran dehydrogenase 2 subunit B 2
Uncharacterized oxidoreductase Elen_0471 1
Uncharacterized oxidoreductase MJ0006 1
Uncharacterized oxidoreductase MT2968 1
Uncharacterized oxidoreductase Mb2924c 1
Uncharacterized oxidoreductase Rv2900c 1

Protein length

Min length 643
Max length 761
Mean length (sd) 697.3 (41.1)
Median length 721.0

Protein length distribution