Homologs in group_124

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09115 FBDBKF_09115 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_10790 FBDBKF_10790 42.6 Morganella morganii S1 - Heat shock protein E
EHELCC_10295 EHELCC_10295 100.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_15125 EHELCC_15125 42.6 Morganella morganii S2 - Heat shock protein E
NLDBIP_14955 NLDBIP_14955 42.6 Morganella morganii S4 - Heat shock protein E
LHKJJB_10715 LHKJJB_10715 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_14390 LHKJJB_14390 42.6 Morganella morganii S3 - Heat shock protein E
HKOGLL_13010 HKOGLL_13010 42.6 Morganella morganii S5 - Heat shock protein E
HKOGLL_13775 HKOGLL_13775 100.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10835 F4V73_RS10835 81.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_124

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_124

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33341 0.0 574 39 11 830 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P21647 2.57e-143 446 32 13 809 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P75857 4.19e-124 397 32 19 821 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 7.4e-123 394 32 19 820 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P46009 2.71e-122 392 32 24 839 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 7.32e-121 389 32 18 842 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 3.58e-120 387 30 20 859 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P45998 1.14e-119 384 31 18 833 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.61e-119 384 31 16 832 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 2.2e-117 379 30 16 832 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 2.46e-114 371 30 21 862 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P77468 4.89e-112 365 31 22 840 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 5.33e-112 364 30 23 847 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 2.29e-107 352 29 15 819 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 3.85e-89 303 30 23 802 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33410 5.29e-87 298 29 21 822 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P26949 1.48e-81 282 28 27 831 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 5.23e-81 281 27 16 840 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 5.23e-81 281 27 16 840 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46005 3.13e-79 276 29 26 806 3 aggC Outer membrane usher protein AggC Escherichia coli
P15484 2.25e-77 273 29 15 671 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33388 1.9e-75 265 28 24 820 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33408 2.2e-69 249 27 18 778 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P76655 1.69e-60 223 25 32 861 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P77196 2.2e-58 218 25 28 848 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K8 7.68e-57 206 30 13 488 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P53514 2.03e-54 206 26 33 835 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P07110 5.73e-54 204 26 31 865 1 papC Outer membrane usher protein PapC Escherichia coli
P75750 4.29e-53 201 26 24 813 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46000 1.03e-52 201 25 23 812 3 fasD Outer membrane usher protein FasD Escherichia coli
P53512 1.97e-46 182 24 21 770 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K7 4.01e-46 172 32 12 362 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P37868 1.32e-45 179 24 22 823 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53513 3.18e-45 178 23 19 768 3 cssD Outer membrane usher protein CssD Escherichia coli
P12050 1.02e-39 161 23 28 777 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 4.69e-30 131 25 27 780 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 2e-26 119 25 40 823 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 2.16e-22 103 26 11 363 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.76e-21 100 26 11 363 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_10640
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 75043 - 77535 (strand: -1)
Length 2493 (nucleotides) / 830 (amino acids)

Contig

Accession ZDB_525
Length 191527 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_124
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MPRHVRRFSALVSLLPVLLSTPAAGAGFNTNFLYGDSAKADLSRFDRDDTLPDGEYTVEISVNGEWKGRFPLRLQQSGHTILIPQDDVPKLGLRDSTPPPQADEDGYVVLSSLVPPESYTLNTGQFQLALNVPQAMLNTVLKGYVDPSRWDQGINAAMVSYNANYYHATNKRDGSDNDNAYLTLSSGLNLAGWQLRDQSSVTYSSGQSTQWNNNTRYLQRGFPAIKSDFRAGDSYTSNELFDSVRFRGATLKTDMRMYPDAWQGFSPVVRGVAQTNALVRIYQDSQLIWQQSVPPGPFVVDSLLPTGSGGDLQVEVNEADGQINRFMVPFSAVPNMLKEGLFKYELNAGEVRLTDTAYHPDFAQLNLQYGINNTLTGYGGVIAAENYQAFLLGSGFNLPIGALSVDITHSDARFGQDMPRYRGESYKVAYSRFIHQTNTNFSLAAYRYSTSGYFSLTDAVQYQELLNRQDITGDLSPQSQSYRQRSTFNININQRIGADYGSVYLAGTLRDYWGGQGSTREYQLGYANNWQDINYTLSAGRTRYSKDSNNPAGSNNNEETRINLTLSVPLTLSGHKVYLTANSMTEEGRYQSSNIGLSGTAGQSNALSYNVNAAHQQSGGTTFSTSAAYRAAPATLNASYSESGRYRQMGAGATGSVVAWSGGILTANQPGETFAVVNVPGTANAIVNNDRNVTTNTQGQVLVPYLSAYRKNSLILDASQAPEDAAELLGNVQDIVPYAGAVTLVNFRTDTRQEFYLHAVRQNGRPLPFGTEVTDGNNNSIGYVGQNSLLYIRSETRPEQINVRLTDTDSGYCRITLTPDPQSAPLPCAE

Flanking regions ( +/- flanking 50bp)

TTCGGTGCCATCAATACCTATCCGCTGTCACTGAACTGAACAGCCGCCTGATGCCGCGCCATGTCCGCCGTTTTTCCGCCCTTGTTTCACTGTTGCCGGTGCTGCTCAGCACACCGGCAGCCGGGGCCGGGTTTAATACCAACTTCCTTTACGGTGATTCCGCCAAAGCGGATTTGTCCCGCTTTGATCGCGACGATACCCTGCCCGACGGTGAATACACCGTTGAAATCAGTGTGAACGGAGAATGGAAGGGACGATTTCCGCTGCGTCTGCAACAGAGCGGACACACGATTCTGATCCCGCAGGATGATGTACCGAAACTGGGACTTCGTGACAGTACACCGCCGCCGCAGGCGGATGAAGACGGCTATGTCGTGCTGAGCAGTCTGGTGCCGCCGGAGAGTTATACCCTGAACACCGGACAGTTTCAGCTGGCACTGAATGTGCCGCAGGCAATGCTGAATACCGTACTTAAAGGATATGTCGACCCGTCGCGGTGGGATCAGGGCATTAATGCCGCGATGGTCAGTTATAACGCTAACTATTATCACGCCACCAATAAACGTGACGGCAGTGATAACGACAATGCTTATCTGACCCTGAGCAGTGGTCTGAATCTGGCTGGCTGGCAGCTGCGGGATCAATCCTCAGTGACCTACAGCAGCGGACAAAGCACGCAATGGAATAACAACACCCGTTACCTGCAGCGTGGTTTTCCGGCAATCAAATCTGATTTCCGGGCCGGCGACAGCTACACCTCCAACGAACTGTTCGATTCTGTCCGTTTCCGTGGCGCGACCCTGAAAACGGATATGCGCATGTATCCCGATGCCTGGCAGGGCTTTTCCCCGGTCGTGCGCGGCGTGGCACAGACCAACGCACTGGTCAGAATCTATCAGGATTCACAGCTTATCTGGCAGCAGAGCGTGCCGCCCGGCCCGTTTGTGGTCGATTCCCTGCTGCCGACCGGCTCAGGCGGGGATCTGCAGGTGGAAGTGAATGAAGCGGACGGGCAAATTAACCGCTTTATGGTGCCCTTCTCCGCTGTGCCGAATATGTTAAAGGAAGGACTCTTTAAATATGAGCTGAATGCCGGTGAAGTCCGTCTGACAGATACCGCTTATCATCCGGATTTTGCGCAGCTTAATCTTCAGTACGGCATTAATAACACGCTGACCGGCTACGGCGGCGTGATTGCGGCGGAAAATTATCAGGCGTTTCTGCTCGGCAGCGGGTTTAACCTGCCGATCGGCGCGTTATCCGTGGATATCACGCACTCCGATGCCCGCTTCGGTCAGGATATGCCGCGTTACCGGGGTGAGAGCTACAAAGTGGCTTACAGCCGCTTTATTCATCAGACCAATACCAATTTTTCACTGGCGGCTTACCGTTATTCCACCAGCGGTTATTTCAGCCTGACGGATGCGGTGCAGTATCAGGAACTGCTTAACCGGCAGGACATTACAGGCGATCTCTCCCCGCAGTCACAGAGTTACCGCCAGCGCAGTACCTTTAATATCAATATCAACCAGCGGATCGGCGCGGATTACGGCTCGGTTTATCTCGCCGGTACACTGCGTGATTACTGGGGCGGCCAGGGCAGCACCCGTGAATACCAGCTCGGTTATGCCAATAACTGGCAGGATATCAATTATACCCTCAGCGCAGGCCGGACCCGTTACAGCAAAGACAGTAACAATCCGGCCGGCAGTAATAATAATGAAGAAACGCGGATAAACCTGACACTCTCCGTTCCGCTGACCCTGTCCGGGCACAAGGTGTATCTGACCGCAAACAGCATGACGGAAGAAGGCCGCTATCAGAGCAGTAATATCGGCCTGAGCGGCACCGCCGGACAGAGCAACGCGCTGAGTTATAACGTGAATGCCGCTCATCAGCAATCCGGCGGTACAACCTTCAGCACCAGTGCTGCCTACCGGGCGGCCCCGGCGACACTGAACGCCTCTTACAGTGAATCCGGCCGTTACCGCCAGATGGGAGCCGGAGCCACCGGCAGTGTGGTGGCCTGGTCCGGTGGTATTCTCACCGCAAATCAGCCGGGGGAAACCTTTGCTGTGGTAAATGTACCGGGCACCGCCAATGCCATCGTAAACAATGACCGTAATGTCACCACCAACACGCAGGGTCAGGTGCTGGTGCCGTATCTGTCCGCTTACCGCAAAAACTCGCTGATCCTGGATGCCTCACAGGCACCGGAAGATGCTGCGGAACTGCTGGGCAATGTGCAGGATATCGTGCCTTACGCCGGGGCGGTGACACTCGTGAACTTCAGAACGGATACCCGGCAGGAATTTTATCTGCATGCCGTGCGTCAGAACGGCAGACCGCTGCCGTTCGGTACAGAAGTCACTGACGGAAATAATAACAGCATCGGCTATGTCGGACAGAACAGCCTCCTTTATATAAGAAGCGAAACGCGGCCGGAACAGATCAATGTCCGCCTGACAGATACGGACAGCGGCTACTGCCGCATCACACTCACGCCGGATCCGCAGAGTGCGCCTCTGCCCTGTGCAGAATAAAGGAGACATCACCGATGCTCAGAAAAACCCATTTTTTTGCCGGTCTGCTG