Homologs in group_136

Help

10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS05165 PMI_RS05165 23.5 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 22.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 24.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 30.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 29.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 30.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 30.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 23.2 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 31.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 28.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45997 0.0 675 43 12 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 0.0 674 43 13 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 0.0 667 42 13 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 6.41e-155 478 35 20 872 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P21647 3.75e-130 412 31 15 772 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P30130 8.74e-122 392 30 21 859 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
Q8XDD1 5.09e-119 384 31 17 850 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 3.32e-118 382 30 16 853 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P37924 1.74e-117 380 29 20 857 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33341 3.53e-116 375 30 16 829 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33410 1.88e-115 375 30 18 829 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P43662 6.46e-115 372 30 23 829 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 1.34e-114 372 30 20 853 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P46009 4.55e-113 369 29 21 858 3 focD Outer membrane usher protein FocD Escherichia coli
P77468 2.01e-100 334 29 24 872 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
Q56983 1.31e-83 288 28 24 837 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.31e-83 288 28 24 837 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33408 5.33e-81 281 29 24 801 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P26949 2.71e-80 279 26 26 831 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46000 1.36e-79 277 27 27 848 3 fasD Outer membrane usher protein FasD Escherichia coli
P33388 1.67e-77 271 27 22 775 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P53517 5.7e-77 270 26 25 859 3 afaC Outer membrane usher protein AfaC Escherichia coli
P07110 1.22e-75 266 27 27 861 1 papC Outer membrane usher protein PapC Escherichia coli
P76655 7.84e-75 264 26 26 838 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P77196 6.17e-73 259 26 23 841 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P46005 1.4e-70 252 27 25 827 3 aggC Outer membrane usher protein AggC Escherichia coli
P53514 2.21e-68 246 27 28 838 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P15484 1.46e-66 242 26 19 752 3 None Outer membrane usher protein CS3-2 Escherichia coli
Q8X5K7 1.29e-54 196 34 9 352 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P53512 1.53e-54 206 25 28 836 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 3.34e-53 202 25 30 838 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 6.53e-52 198 24 27 838 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K8 2.44e-48 182 28 14 491 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P75750 2.83e-48 187 23 30 847 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P12050 3.61e-47 184 24 26 763 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 2.6e-39 160 26 31 803 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 9.9e-33 134 28 10 357 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.05e-31 130 27 9 357 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P45420 1.32e-29 129 23 30 784 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02640
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 576156 - 578690 (strand: -1)
Length 2535 (nucleotides) / 844 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042617 fimbrial biogenesis outer membrane usher protein VF1235 Adherence

Protein Sequence

MNFNNRLHLISYRYSLPFCVALGIGVITISSFAAEEAEFDPSFLHSVQGKNAIDIRRFNYGNPIPEGKYYADIYLNNEWKGKANVQYLYTDNANTSTLCLTPELLSLIDVVKGTVPENSYKATCYPASEGLPSAKFHFDLSTLKLNIEIPQAQVNTRPRGYIAPAQWQSGVPAAFVNYDVNYYQYNTPDINNEQTYLGLKAGLNLWGWAFRHRGGESWNNGHSTGYQNIETNVTHDIARLRAQFTLGDFYTNGELMDSLSLRGIRLASDERMLPNSLRGYAPIVRGIANSNAKVTIYQNAHILYETTVPAGPFVINDLYPSGYAGDLLVQITESNGQTRTFTVPFASVAQLIRPGFSRWQMSVGRYRYANETYHDLIAQGTYQYGLTNDITLNSGLTTSSKYTAGLAGVAFNTPIGAIASDITLSRTTFNHSNVTRKGYSLHTSYSVNIPTTSTNITLAAYRYSSKDFYHLKDALLANHSEFIDDVSIKSAAFYRPKNQFQVSINQELGEKWGNIFLTGTTYNYWEHKGSRNEYQMGYSHFWKKLGYQIGFSQSRDNEQQHRDDRFYVNFTLPLGERVQSPIFSTVLNYNKGEKNSIQTSISGIAGEDNQFSYGISGNSQESGPSGYAMNGGYRSPYVNVTATVGQDTQHNRQMSLGASGAVVVHPYGVTLSNDLSDTFTIIHAKGAQGAVINNAPGSRLDFWGNGIVPYVTPYEKNQISIDPTNLDLNVELSATEQEIIPRANSATLVTFNTQTGRSLLFDIRMPDGSTPPMASEVLDEHKQLVGYVAQAGRLFTRGLPKQGQLDVIWGPNHDDKCSFTYHATRNETDMRPQTIPVQCIPHSN

Flanking regions ( +/- flanking 50bp)

ATTATGGTGGATACCAACAAGGTGAATCTACTTTGGAATAAGGTAATATAATGAATTTTAATAATCGGTTACACCTCATTTCTTATCGTTATTCTCTTCCGTTTTGTGTTGCTTTGGGGATTGGGGTGATAACAATTTCTTCATTCGCTGCTGAAGAAGCTGAATTTGATCCTAGCTTTTTGCATTCAGTGCAAGGAAAGAATGCGATTGATATACGTCGCTTTAATTATGGCAACCCTATTCCTGAGGGCAAGTATTACGCTGATATCTATCTCAATAATGAATGGAAAGGAAAAGCTAATGTACAGTATTTATATACTGACAATGCGAATACGTCGACGTTATGTCTAACGCCGGAATTACTTTCATTAATTGATGTCGTCAAAGGCACTGTTCCTGAAAACAGTTATAAAGCCACTTGTTATCCCGCCTCAGAAGGACTCCCCTCAGCAAAATTTCATTTTGATTTATCCACTTTAAAGCTGAATATAGAAATTCCTCAGGCACAAGTGAATACTCGACCTCGAGGATATATTGCCCCTGCACAGTGGCAAAGTGGAGTCCCTGCCGCATTTGTCAACTATGATGTTAACTATTATCAATACAATACTCCGGATATAAATAATGAGCAGACTTACCTTGGGTTAAAAGCGGGACTCAATTTATGGGGATGGGCTTTTCGTCACCGTGGTGGTGAAAGCTGGAATAATGGTCATTCTACCGGATATCAGAATATCGAAACAAATGTGACGCATGATATTGCTCGGTTACGGGCACAATTCACATTAGGTGATTTTTATACGAATGGCGAGTTAATGGATAGCCTTAGCTTACGGGGAATTCGATTAGCATCGGATGAACGAATGTTACCCAACTCTTTACGTGGCTACGCTCCGATCGTGCGAGGCATTGCTAATAGTAATGCTAAAGTTACGATTTATCAAAATGCTCACATCCTTTATGAAACAACTGTGCCTGCTGGCCCCTTTGTCATTAATGATTTGTATCCCAGTGGATATGCTGGCGACCTTCTTGTGCAAATAACCGAATCTAATGGACAAACAAGAACATTTACGGTTCCTTTTGCTTCTGTTGCCCAACTTATTCGTCCCGGATTTAGCCGTTGGCAAATGTCAGTGGGACGCTATCGTTATGCAAATGAGACATATCATGATTTAATTGCACAAGGCACATATCAATATGGTTTGACAAATGATATCACTTTAAATAGTGGACTGACCACAAGCTCAAAATATACCGCAGGATTGGCTGGTGTTGCTTTTAACACGCCGATTGGGGCAATTGCATCTGACATTACATTGTCCAGAACAACATTTAATCACTCTAACGTAACGCGTAAAGGCTACAGTTTACATACTAGCTATAGCGTCAATATTCCGACCACGAGTACAAATATCACGTTAGCAGCCTATCGTTATTCATCTAAAGATTTTTACCATTTGAAAGATGCGCTATTGGCTAATCACAGTGAATTTATTGATGATGTTTCCATAAAAAGTGCCGCATTTTATCGCCCTAAAAATCAATTCCAAGTTTCAATTAATCAAGAATTAGGTGAAAAATGGGGAAATATATTTTTAACTGGTACCACTTATAATTACTGGGAGCATAAAGGAAGTCGTAATGAGTATCAGATGGGATATAGCCATTTTTGGAAAAAACTTGGTTATCAGATTGGCTTTTCTCAATCACGAGATAATGAGCAACAACACCGAGATGACAGATTTTATGTGAACTTTACGCTTCCTTTGGGAGAGCGTGTTCAAAGCCCCATTTTTTCTACTGTCTTAAATTATAATAAAGGCGAGAAAAACAGCATTCAAACATCCATCAGCGGTATCGCTGGGGAAGATAATCAATTCTCTTATGGTATTTCAGGTAATAGTCAGGAAAGTGGACCTTCCGGCTATGCGATGAATGGAGGCTATCGTTCACCTTATGTAAATGTAACCGCAACCGTCGGGCAAGATACTCAACATAATCGTCAAATGTCATTGGGTGCGTCGGGGGCCGTTGTCGTACATCCTTATGGAGTGACGTTAAGTAATGATTTAAGTGATACTTTTACCATTATCCATGCAAAAGGAGCACAAGGTGCGGTCATTAATAATGCACCAGGTAGCCGATTAGATTTTTGGGGAAATGGTATTGTGCCTTATGTCACGCCTTATGAAAAAAATCAAATTAGCATCGACCCCACTAATTTGGATTTGAATGTTGAGTTATCAGCAACAGAACAAGAAATCATTCCTCGCGCTAATAGTGCCACGTTAGTGACATTTAATACTCAAACAGGGAGAAGCCTACTATTTGATATTCGAATGCCAGATGGTAGTACTCCTCCAATGGCTTCCGAGGTTTTGGATGAGCATAAGCAGTTAGTCGGATATGTGGCTCAAGCTGGACGCTTATTTACCCGCGGTCTTCCTAAACAAGGTCAACTTGATGTGATATGGGGACCAAATCATGACGATAAATGCTCATTTACATATCATGCGACACGCAATGAAACTGACATGCGACCTCAAACCATTCCTGTTCAGTGTATACCGCACTCTAATTAGGAACAAACCATGAAAAGAATCTTTGTCATATTATTTCTTTTAACTCTATT