Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 22.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 21.2 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05765 PMI_RS05765 32.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 27.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 28.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 25.2 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 23.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 22.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 25.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42915 8.68e-71 252 26 22 791 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P43662 1.8e-66 240 24 21 802 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 7e-63 230 23 20 820 3 focD Outer membrane usher protein FocD Escherichia coli
P77468 1.3e-60 224 24 21 815 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P30130 8.26e-60 221 24 20 829 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33388 6.13e-58 215 25 18 786 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P53517 1.61e-56 212 25 20 731 3 afaC Outer membrane usher protein AfaC Escherichia coli
P37924 1.47e-55 209 22 22 819 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75857 2.34e-54 206 24 22 774 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P26949 3.19e-54 205 25 22 779 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 5.2e-54 204 23 18 708 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q8XDD1 7.61e-54 204 23 21 774 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33397 1.94e-53 202 24 31 809 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 2.4e-53 202 25 28 753 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45997 1.33e-50 194 24 32 809 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P46000 5.48e-50 192 25 20 731 3 fasD Outer membrane usher protein FasD Escherichia coli
P45998 1.17e-49 191 23 30 809 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P53512 2.81e-47 184 26 27 782 3 cssD Outer membrane usher protein CssD Escherichia coli
Q56983 3.54e-47 184 23 29 862 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 3.54e-47 184 23 29 862 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53513 1.1e-46 182 26 29 824 3 cssD Outer membrane usher protein CssD Escherichia coli
P46005 1.33e-45 179 24 24 738 3 aggC Outer membrane usher protein AggC Escherichia coli
Q8X5K8 6.83e-43 166 27 17 504 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P15484 1.42e-42 171 25 19 723 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33341 2.07e-40 163 24 26 764 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P07110 1.58e-36 151 24 30 710 1 papC Outer membrane usher protein PapC Escherichia coli
P77196 1.83e-36 151 23 23 718 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 3.98e-34 144 23 23 723 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P21647 1.29e-33 142 21 22 791 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P75750 9.04e-32 136 22 29 846 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P76655 9.93e-30 130 21 22 705 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P45420 4.85e-28 124 23 25 668 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 1.26e-27 119 27 9 356 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P06970 5.02e-27 121 22 26 754 3 faeD Outer membrane usher protein FaeD Escherichia coli
P76137 8.47e-26 114 26 8 353 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P33410 9.16e-26 117 19 21 712 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q8X5K7 5.2e-25 111 27 6 299 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P37868 7.25e-23 108 23 21 619 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 2.45e-22 106 24 21 606 3 fanD Outer membrane usher protein FanD Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05725
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1246395 - 1248809 (strand: -1)
Length 2415 (nucleotides) / 804 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MSKISFRLKTSLLLILNAYPFFSIANNNIHSLYKSVLSNIDNKTIGKLLNNEHPDGYYSTNIYINENKKETIILYYENKDGILTPRINVNDLIRLNIDPSFYNIPIDLSSDLLLSDYNIDFKYNFSSQSLYLTIPQKALDNKKNMLASQVLWDDGVPALFSSYSYFGKYNNQNKIEHKISFNSGANLGAWRVRSKSYYHHTHKQQQFKLYSLYAYHQLNTLLATLNVGEFRPTSRMLSTDKLIGFQLISSNLLSGNDLYMNSPIIEEIAESHAEIKVKQQGRTIYETIVPPGPFILNDLPVIGSNELVLEIKEADGRIKKSTHYFTTMPNQLKKGRYQYNFISGYSYDRYNQFNNQNNNPIFLLGEFSYGINQKITAYGAIRKKLNSNTFFSGLSLDLGRWGGVASDISYFEHNNLLKYQLRYNKRWSNIGTSLNISSSHYQSIKSDSVSIRKSQTDNIKNSYTISLFQPIKSFGTFSIGYHQNSYAKRKNDFTINTSLSSSIKKMNYSIKYQYKNEKYYNDNHFSLNFNIPLTNSSQSYHWVSNQFDYHPNNKGYINSTTIGGSLLEHYRLGYSINYRRDFSHPNAGYHTSVNTQYKGRYQSYSINTTKSSNNKTNLRLGINGAIVLHQSGVTLAPDLGNTFAIVNTNGIAGIKTNRSSQAITDNNGNLILPHIMPYRKNTIGLNINSLPEFSNTKTQSKIIVPTLGAVAKINFPINRGYNVLFTSNTPIPFAANVMAFDDNNNLISSDSVYDHNRIFLSGIKESGTVQVKWGDTEEQQCFFHYNVKNESKNNSIIKKQIYCQ

Flanking regions ( +/- flanking 50bp)

AGTCGATGAGTATGAGCAGACTATCATTGCAACCCCAAAGGAACTTATTTATGAGTAAGATAAGTTTTAGACTAAAAACATCTTTGCTATTGATATTAAATGCATACCCTTTCTTTTCTATTGCTAACAATAATATTCATTCTCTATATAAAAGTGTATTGTCAAATATTGATAATAAAACCATCGGCAAGTTATTAAATAATGAACATCCTGATGGTTATTACTCAACAAATATTTATATCAACGAAAATAAAAAAGAAACCATTATTTTATATTATGAAAATAAAGACGGTATATTAACACCAAGGATTAATGTTAATGATTTAATTCGTTTAAATATTGATCCATCTTTTTATAATATTCCTATTGATTTAAGTTCTGATTTGTTATTAAGCGATTACAATATTGATTTTAAATATAATTTCTCCTCGCAATCATTATATTTAACTATTCCACAAAAAGCCTTAGATAATAAAAAAAATATGCTTGCTAGCCAAGTTTTATGGGATGATGGTGTCCCTGCTTTGTTTAGCTCATATTCTTATTTTGGCAAATATAACAATCAAAATAAGATAGAACACAAAATCAGTTTTAACTCAGGTGCTAACTTAGGTGCTTGGCGAGTACGTAGTAAAAGTTATTATCATCATACGCATAAGCAACAGCAATTTAAGCTATACTCATTATATGCTTATCATCAATTAAATACGCTGTTGGCAACGCTTAATGTGGGGGAATTTCGACCAACCAGTAGAATGTTATCAACAGATAAATTAATTGGATTTCAACTTATATCTAGTAATTTGCTCTCTGGTAATGATCTCTATATGAATAGTCCTATCATAGAAGAGATTGCAGAATCTCATGCTGAAATTAAAGTGAAACAACAAGGAAGAACCATTTATGAAACTATTGTTCCTCCTGGGCCTTTTATTTTAAACGATCTACCTGTTATAGGTAGCAATGAATTGGTATTAGAAATAAAAGAAGCAGATGGACGTATAAAAAAAAGTACTCATTACTTTACTACAATGCCAAACCAATTAAAAAAAGGTCGTTATCAATATAATTTTATTTCTGGATATTCTTATGATAGATATAACCAGTTTAATAATCAAAATAATAACCCTATTTTTTTACTGGGTGAGTTCTCCTATGGTATTAATCAAAAAATAACCGCTTATGGTGCAATTAGAAAGAAGCTGAATAGCAATACTTTCTTTTCAGGATTATCATTAGATTTAGGACGCTGGGGGGGAGTAGCCAGTGATATTAGTTATTTTGAACACAATAATCTATTAAAATACCAGTTGCGCTATAATAAACGATGGAGCAATATTGGTACTTCTTTAAATATATCTTCTAGCCATTATCAATCAATAAAATCTGATAGTGTTAGCATTAGAAAAAGTCAAACAGACAACATAAAAAATAGCTATACAATTTCTCTCTTTCAACCGATTAAATCTTTCGGGACATTTTCTATTGGTTATCATCAAAATTCTTATGCCAAAAGAAAAAATGACTTTACAATCAATACTTCTCTATCATCTTCTATAAAAAAAATGAATTATAGTATAAAATATCAATATAAAAATGAAAAATATTATAATGACAATCATTTTTCTTTAAATTTTAATATTCCACTAACAAATAGCTCTCAATCCTATCATTGGGTAAGCAATCAATTTGATTATCATCCAAACAATAAAGGTTATATAAATAGTACGACTATAGGTGGAAGTTTATTAGAACATTATCGCTTAGGCTATTCTATTAATTACCGACGGGATTTTAGCCACCCAAATGCTGGCTATCATACTTCAGTAAATACTCAGTATAAGGGGAGATATCAATCTTATTCTATTAATACAACTAAATCGTCTAATAATAAAACCAATTTAAGATTAGGGATTAATGGTGCAATAGTGTTACATCAAAGTGGAGTAACTTTGGCACCTGACTTAGGTAATACTTTTGCTATTGTAAATACGAATGGCATTGCCGGAATTAAAACTAATCGTTCTTCACAAGCCATTACAGACAATAACGGTAATTTAATATTACCGCACATCATGCCATATCGTAAAAATACTATTGGACTAAACATAAATTCGTTACCTGAGTTTAGTAATACTAAAACTCAAAGTAAAATCATCGTACCTACTTTAGGTGCGGTAGCAAAAATCAATTTCCCTATAAATAGGGGCTATAATGTTTTATTTACCTCAAATACACCAATTCCTTTTGCTGCCAATGTAATGGCATTTGATGATAATAATAATCTCATTTCTAGTGATTCTGTCTATGACCACAATAGAATATTCCTCTCCGGAATAAAAGAAAGCGGAACGGTACAAGTAAAATGGGGAGATACAGAGGAGCAACAATGTTTCTTCCATTATAACGTAAAAAATGAAAGTAAAAATAATTCAATTATTAAGAAACAAATTTATTGCCAATAATGAATAATTTTTATTCTTGAATATTTATGTAAGGTGTTTCTATGAAATCA