Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 47.4 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 61.1 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 42.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 61.1 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 47.4 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 42.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 61.1 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 47.4 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 42.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 47.4 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 61.1 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 42.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 47.4 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 61.1 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 42.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 40.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 61.2 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 46.9 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01285 PMI_RS01285 66.4 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 38.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 41.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 42.1 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 788 46 8 845 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 688 42 9 815 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 630 41 14 810 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 3.29e-177 535 37 12 827 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 1.27e-160 492 35 17 819 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46009 1.18e-91 311 28 26 848 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 1.4e-80 281 27 24 865 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P30130 7.31e-79 276 26 27 898 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P77468 6.09e-77 271 27 25 867 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P37924 1.45e-71 256 26 27 859 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43662 1.33e-70 253 26 21 815 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75857 2.08e-70 253 26 26 846 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P33129 2.31e-69 250 26 26 824 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
Q8XDD1 2.51e-69 249 25 28 874 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P53517 1.35e-65 239 25 27 866 3 afaC Outer membrane usher protein AfaC Escherichia coli
P21647 8.58e-63 231 27 33 854 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33397 4.06e-61 226 25 21 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 4.95e-60 223 26 22 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 6.11e-59 219 26 23 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 1.02e-55 210 25 26 769 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33408 3.76e-55 208 25 29 798 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 1.06e-52 201 24 27 864 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.06e-52 201 24 27 864 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46000 2.48e-51 197 25 24 836 3 fasD Outer membrane usher protein FasD Escherichia coli
P33388 6.75e-51 196 25 30 829 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46005 1.26e-48 189 24 26 858 3 aggC Outer membrane usher protein AggC Escherichia coli
P53513 6.02e-47 184 25 26 759 3 cssD Outer membrane usher protein CssD Escherichia coli
P53512 1.78e-46 182 25 26 763 3 cssD Outer membrane usher protein CssD Escherichia coli
P12050 3.67e-45 178 24 24 760 3 fanD Outer membrane usher protein FanD Escherichia coli
P26949 3.44e-43 172 23 26 834 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P37868 4.3e-40 162 25 25 705 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P15484 1.54e-36 152 26 22 660 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33410 8.64e-35 146 23 27 865 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q8X5K7 1.48e-33 136 28 11 360 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 1.48e-30 130 26 15 473 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P06970 4.27e-27 122 25 13 419 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 8.19e-22 105 22 31 784 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 9.34e-12 71 24 14 357 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 5.28e-11 68 23 14 361 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01235
Feature type CDS
Gene -
Product outer membrane usher protein
Location 303249 - 305876 (strand: 1)
Length 2628 (nucleotides) / 875 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042623 MR/P fimbria usher protein MrpC VF1233 Adherence

Protein Sequence

MAKLFKTIDLNVKHKSKQCRGRSATTLIYFVIIGMASIASDSFAVSKDIEFNSDILDLKDRGNIDLSSFSRAGYITPGKYELIININNNELSGTYRVDYIVPKDDPKASEPCISPILVKQFALRPEWLKKLTWKDKGNCLNEASLPGMSLRTDLGSGVFFITLPQAYLEYSSPNWESPSFWDEGIAGLLFDYNVNANVRAPSDGKQKQQITANGTAGANLGVWRFRADWQASYEHTTGVLHSTENHWNWDQFYLYRAITKWGARLVMGETYLRSNLLDNFRFTGISLLTDEQMLPPNLRGYAPEITGVAKTNAKVTVSQQGRIIYETQIAPGPFRIQDLHDAVSGRLDVRIEEQDGTIQEYQIDTANIPYLTRPGRLQYKVSAGKPSRLDHKTEGPIFAMGEFSWGVNNGWSLFGGTLVSKDYNSASLGFGRDLMMLGAISFDTTHSWATFANENKHYHGSSYRISYSKRFESIDGQITFAGYRFSDRHFMSMDQYLDRRYRYGAQENNKELYTLTLSKQFPQWGLSTYINYNHQRYWDRPNNDYYNFSLSKYLAIGKFKNINISLSAYRNRFNGNHDNGVYFNINLPWRDRATISYNSVINKEGNSHNVSYFDRIDDNNNYRLSAGVSSRGKPSADGFFTHYGDVALVTASASHINGDYTSASLSFQGGATLTTKGGDFHRSNMPGATRLLIDTQGVSDVPVKSLSAISHTNIFGKAVIPDINHYYRGSASIDLKQLPDNVEALRSIHQLTLTEGAIGYRQFDVIAGHKAMATVQLAEGGAPPFAATVTTLNGRELGVFNDGGKVYLSGINSGDVLYVHWDGKNQCQLSIPKLADTQLITSLLLTCFQRKPTISTSFLETDKTQALPQHSFLSK

Flanking regions ( +/- flanking 50bp)

TTGACTGTTTTGGGCTCGAATATTACTAAATGGATTAGTTAGGTTTACTTATGGCTAAATTATTCAAGACGATTGATTTAAATGTTAAACATAAAAGTAAGCAGTGCAGAGGTCGTTCTGCTACCACACTGATCTATTTCGTGATTATAGGGATGGCAAGTATTGCCAGCGATTCATTTGCTGTTAGCAAAGATATTGAATTTAACTCAGATATTCTTGACTTAAAAGATCGAGGAAATATTGATTTATCAAGCTTTTCCCGAGCGGGATATATTACTCCTGGCAAGTATGAGTTAATTATTAATATTAATAACAATGAATTAAGTGGAACTTATCGTGTTGACTATATTGTGCCCAAAGATGATCCCAAGGCAAGCGAACCTTGTATCTCACCTATATTAGTTAAGCAGTTTGCACTCAGACCAGAATGGTTAAAAAAGTTAACTTGGAAAGATAAGGGTAATTGCCTTAATGAGGCATCGTTACCAGGTATGAGCCTGAGGACAGATTTAGGTAGTGGGGTTTTTTTTATTACTCTTCCTCAAGCTTATCTAGAATATTCATCACCGAATTGGGAGTCGCCTTCTTTTTGGGACGAAGGTATTGCTGGATTATTGTTTGATTATAACGTTAATGCCAATGTCAGAGCGCCTAGTGATGGCAAGCAGAAACAGCAGATCACCGCAAATGGTACGGCGGGGGCAAATTTAGGTGTTTGGCGTTTTCGGGCAGATTGGCAAGCAAGTTATGAGCACACTACAGGTGTATTGCATAGCACAGAAAATCACTGGAATTGGGATCAATTCTATCTTTATCGAGCGATAACGAAATGGGGCGCCCGTTTAGTCATGGGGGAGACTTACTTACGTTCAAACCTATTAGATAATTTCCGTTTTACGGGAATAAGTTTACTTACGGATGAGCAAATGTTGCCCCCTAATTTACGAGGTTATGCTCCAGAGATCACGGGAGTTGCAAAAACGAATGCAAAAGTCACCGTGAGTCAACAAGGACGGATTATCTATGAGACACAAATCGCGCCTGGGCCATTTCGTATTCAAGATCTGCATGATGCGGTAAGTGGACGCTTGGATGTTCGTATTGAAGAGCAGGACGGAACAATACAAGAATACCAAATTGATACAGCCAATATTCCTTATCTTACAAGACCGGGACGCCTTCAATATAAAGTATCTGCGGGTAAGCCTTCTCGATTAGATCATAAAACTGAAGGGCCTATTTTTGCAATGGGAGAGTTTTCTTGGGGAGTGAATAATGGTTGGTCTCTTTTTGGTGGCACTTTAGTTTCTAAGGATTATAACTCGGCCTCGCTAGGTTTTGGACGAGATCTAATGATGTTAGGTGCTATCTCTTTTGATACGACTCATTCATGGGCAACCTTCGCTAATGAGAATAAACACTATCATGGCAGTTCATATCGAATTAGCTATTCAAAGCGTTTTGAATCTATTGATGGGCAAATCACTTTTGCAGGCTATCGATTCTCTGATCGTCATTTTATGAGTATGGATCAATATTTAGATAGGCGTTATCGCTATGGCGCACAAGAAAATAATAAAGAGCTTTATACCCTTACACTGAGTAAACAATTTCCTCAATGGGGACTTAGTACCTATATAAATTATAACCATCAAAGGTATTGGGATCGACCGAATAACGACTATTACAACTTCTCTTTATCAAAGTATCTCGCTATCGGGAAGTTTAAAAACATTAACATTAGCTTATCCGCTTATCGTAATCGTTTTAATGGCAATCATGACAACGGCGTGTATTTCAACATTAATTTGCCTTGGCGTGATAGAGCAACGATAAGTTATAACTCGGTCATAAATAAAGAAGGTAACTCACATAATGTCAGCTATTTCGATCGCATTGATGATAACAATAATTATCGTCTAAGTGCAGGAGTTAGTAGTCGAGGTAAACCATCGGCTGATGGTTTCTTTACACATTATGGTGATGTTGCTTTAGTAACGGCTTCAGCCAGTCATATTAACGGCGACTATACTTCGGCATCTTTATCTTTCCAAGGTGGGGCAACATTAACCACTAAAGGCGGGGATTTTCACCGTAGCAATATGCCGGGAGCAACCCGTTTGTTAATTGATACTCAAGGTGTTTCCGATGTCCCGGTAAAAAGTCTTAGTGCCATATCTCATACCAATATTTTTGGCAAGGCGGTGATCCCCGATATTAATCACTATTATCGAGGCAGTGCTTCTATCGATCTTAAACAGCTACCAGACAATGTTGAAGCACTACGTTCTATTCATCAATTAACTTTGACTGAAGGCGCTATTGGCTATCGTCAATTTGATGTGATTGCCGGACACAAAGCGATGGCAACAGTACAGTTGGCTGAAGGAGGCGCTCCGCCATTTGCAGCGACAGTAACAACGCTTAATGGTCGAGAATTAGGTGTTTTTAACGACGGTGGAAAGGTTTATTTAAGCGGTATTAATTCAGGCGATGTCTTGTATGTACATTGGGATGGTAAAAACCAATGCCAATTATCCATTCCTAAATTGGCGGATACACAACTGATCACATCACTGCTTTTAACTTGCTTTCAAAGAAAGCCGACTATTTCAACATCATTCCTAGAAACAGATAAAACGCAAGCATTACCTCAACATTCATTTCTTAGTAAATAACGCTAAGTAATAACAATAATTGATTGATAGAGAGAAGAGTAATTAAAGAT