PF12833

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF12833
Protein list: lists the 126 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF12833
Description Helix-turn-helix domain

Occurence in the database

PF12833 is associated with 126 different proteins
The 126 proteins are classified into 19 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_574 FBDBKF_00925 169761 170480 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
1 group_576 FBDBKF_00950 173699 174586 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
2 group_760 FBDBKF_02825 260709 261545 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
3 group_763 FBDBKF_02915 276799 277881 -1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella morganii S1
4 group_400 FBDBKF_06550 150409 151329 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S1
5 group_2731 FBDBKF_06570 153541 154398 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
6 group_2772 FBDBKF_07625 36349 37383 1 eutR HTH-type transcriptional regulator EutR Morganella morganii S1
7 group_274 FBDBKF_08065 151153 151938 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
8 group_1515 FBDBKF_09355 102949 103581 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
9 group_1574 FBDBKF_09850 67169 67933 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
10 group_1689 FBDBKF_10940 13276 14100 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
11 group_401 FBDBKF_13325 43161 43529 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
12 group_1957 FBDBKF_14280 55590 56366 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
13 group_191 FBDBKF_16410 6960 7343 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
14 group_35 FBDBKF_17200 22313 23212 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
15 group_35 FBDBKF_18175 654 1568 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
16 group_196 FBDBKF_18920 250 1188 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
17 group_196 FBDBKF_20455 121 537 -1 tetD Transposon Tn10 TetD protein Morganella morganii S1
18 group_576 EHELCC_00595 134282 135169 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
19 group_574 EHELCC_00620 138388 139107 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
20 group_35 EHELCC_01690 332289 333188 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
21 group_760 EHELCC_03295 648529 649365 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
22 group_763 EHELCC_03385 664619 665701 -1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella morganii S2
23 group_1574 EHELCC_04650 259134 259898 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
24 group_1689 EHELCC_05285 45368 46192 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
25 group_1957 EHELCC_08000 60619 61395 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
26 group_191 EHELCC_08275 123946 124329 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
27 group_401 EHELCC_08770 231662 232030 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
28 group_400 EHELCC_09595 150981 151901 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S2
29 group_2731 EHELCC_09615 154113 154970 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
30 group_1515 EHELCC_10055 42523 43155 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
31 group_2772 EHELCC_13455 10543 11577 1 eutR HTH-type transcriptional regulator EutR Morganella morganii S2
32 group_274 EHELCC_13895 125347 126132 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
33 group_35 EHELCC_18210 527 1441 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
34 group_196 EHELCC_18665 250 1188 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
35 group_763 NLDBIP_00075 14435 15517 1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella morganii S4
36 group_760 NLDBIP_00165 30771 31607 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
37 group_35 NLDBIP_01770 346948 347847 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
38 group_574 NLDBIP_02840 541029 541748 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
39 group_576 NLDBIP_02865 544967 545854 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
40 group_1574 NLDBIP_04650 258930 259694 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
41 group_1689 NLDBIP_05605 86433 87257 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
42 group_1957 NLDBIP_08325 60619 61395 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
43 group_191 NLDBIP_08600 123946 124329 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
44 group_401 NLDBIP_09095 231662 232030 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
45 group_400 NLDBIP_09975 150981 151901 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S4
46 group_2731 NLDBIP_09995 154113 154970 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
47 group_1515 NLDBIP_10400 20794 21426 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
48 group_2772 NLDBIP_13900 31418 32452 1 eutR HTH-type transcriptional regulator EutR Morganella morganii S4
49 group_274 NLDBIP_14340 146222 147007 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
50 group_35 NLDBIP_18135 728 1642 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
51 group_196 NLDBIP_18640 24325 25263 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
52 group_35 LHKJJB_00265 44838 45737 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
53 group_760 LHKJJB_01870 361078 361914 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
54 group_763 LHKJJB_01960 377168 378250 -1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella morganii S3
55 group_1689 LHKJJB_02485 63957 64781 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
56 group_574 LHKJJB_04355 148270 148989 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
57 group_576 LHKJJB_04380 152208 153095 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
58 group_401 LHKJJB_05170 25129 25497 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
59 group_191 LHKJJB_05665 132830 133213 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
60 group_1957 LHKJJB_05940 195764 196540 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
61 group_2731 LHKJJB_07760 62268 63125 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
62 group_400 LHKJJB_07780 65337 66257 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S3
63 group_274 LHKJJB_08510 12742 13527 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
64 group_2772 LHKJJB_08950 127297 128331 -1 eutR HTH-type transcriptional regulator EutR Morganella morganii S3
65 group_1515 LHKJJB_10955 170102 170734 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
66 group_1574 LHKJJB_13980 75684 76448 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
67 group_35 LHKJJB_18330 566 1480 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
68 group_196 LHKJJB_18535 250 1188 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
69 group_35 HKOGLL_00305 50349 51248 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
70 group_760 HKOGLL_01910 366589 367425 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
71 group_763 HKOGLL_02000 382679 383761 -1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella morganii S5
72 group_576 HKOGLL_02665 134487 135374 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
73 group_574 HKOGLL_02690 138593 139312 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
74 group_1957 HKOGLL_04975 45210 45986 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
75 group_191 HKOGLL_05250 108537 108920 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
76 group_401 HKOGLL_05745 216253 216621 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
77 group_2731 HKOGLL_07310 62268 63125 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
78 group_400 HKOGLL_07330 65337 66257 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S5
79 group_274 HKOGLL_08060 12742 13527 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
80 group_2772 HKOGLL_08500 127297 128331 -1 eutR HTH-type transcriptional regulator EutR Morganella morganii S5
81 group_1574 HKOGLL_12555 67950 68714 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
82 group_1515 HKOGLL_14015 103403 104035 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
83 group_1689 HKOGLL_15865 87397 88221 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
84 group_35 HKOGLL_18065 544 1458 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
85 group_196 HKOGLL_18270 250 1188 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
86 group_1574 F4V73_RS00495 104430 105194 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
87 group_35 F4V73_RS01695 372336 373250 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
88 group_3651 F4V73_RS01705 374294 375187 -1 AraC family transcriptional regulator Morganella psychrotolerans
89 group_1957 F4V73_RS02630 554112 554885 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
90 group_191 F4V73_RS02930 622208 622591 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
91 group_401 F4V73_RS03430 731923 732291 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
92 group_4158 F4V73_RS04165 878917 879759 1 AraC family transcriptional regulator Morganella psychrotolerans
93 group_760 F4V73_RS04870 1035579 1036391 1 AraC family transcriptional regulator Morganella psychrotolerans
94 group_760 F4V73_RS05265 1120695 1121543 1 AraC family transcriptional regulator Morganella psychrotolerans
95 group_763 F4V73_RS05360 1136905 1137993 -1 ada bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada Morganella psychrotolerans
96 group_35 F4V73_RS05955 1266469 1267401 1 AraC family transcriptional regulator Morganella psychrotolerans
97 group_574 F4V73_RS06920 1435870 1436604 -1 AraC family transcriptional regulator Morganella psychrotolerans
98 group_576 F4V73_RS06945 1439965 1440864 -1 AraC family transcriptional regulator Morganella psychrotolerans
99 group_576 F4V73_RS07325 1529150 1530061 -1 AraC family transcriptional regulator Morganella psychrotolerans
100 group_1689 F4V73_RS08355 1730493 1731317 1 AraC family transcriptional regulator Morganella psychrotolerans
101 group_1515 F4V73_RS10610 251829 252245 1 AraC family transcriptional regulator Morganella psychrotolerans
102 group_274 F4V73_RS12515 94575 95351 -1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
103 group_3651 F4V73_RS12525 96763 97122 1 AraC family transcriptional regulator Morganella psychrotolerans
104 group_274 F4V73_RS12930 193914 194699 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
105 group_2772 F4V73_RS13495 333383 334414 -1 eutR HTH-type transcriptional regulator EutR Morganella psychrotolerans
106 group_196 F4V73_RS13825 399088 400026 1 helix-turn-helix domain-containing protein Morganella psychrotolerans
107 group_400 F4V73_RS15385 62093 63007 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella psychrotolerans
108 group_4812 F4V73_RS17025 29565 29939 1 helix-turn-helix domain-containing protein Morganella psychrotolerans
109 group_1574 PMI_RS02770 607523 608284 1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
110 group_35 PMI_RS03950 890400 891296 -1 AraC family transcriptional regulator Proteus mirabilis HI4320
111 group_3651 PMI_RS04495 1000488 1001414 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
112 group_574 PMI_RS05015 1096170 1096856 1 AraC family transcriptional regulator Proteus mirabilis HI4320
113 group_401 PMI_RS05115 1116915 1117283 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
114 group_196 PMI_RS19730 1237353 1238267 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
115 group_763 PMI_RS05985 1312855 1313718 1 methylated-DNA--[protein]-cysteine S-methyltransferase Proteus mirabilis HI4320
116 group_2731 PMI_RS06035 1322515 1323360 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
117 group_191 PMI_RS06165 1352991 1354160 1 XylR family transcriptional regulator Proteus mirabilis HI4320
118 group_191 PMI_RS07795 1706994 1707380 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
119 group_1957 PMI_RS08790 1922171 1922956 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
120 group_1689 PMI_RS09670 2109559 2110395 1 AraC family transcriptional regulator Proteus mirabilis HI4320
121 group_1515 PMI_RS13290 2949698 2950453 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
122 group_3651 PMI_RS14600 3236648 3237496 -1 chbR transcriptional regulator ChbR Proteus mirabilis HI4320
123 group_274 PMI_RS14650 3246053 3246823 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
124 group_191 PMI_RS18315 4022520 4023335 -1 AraC family transcriptional regulator Proteus mirabilis HI4320
125 group_400 PMI_RS18495 4060644 4061546 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Proteus mirabilis HI4320