Homologs in group_1647

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10940 FBDBKF_10940 47.1 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_05285 EHELCC_05285 47.1 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_05605 NLDBIP_05605 47.1 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_02485 LHKJJB_02485 47.1 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_15865 HKOGLL_15865 47.1 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS08355 F4V73_RS08355 50.0 Morganella psychrotolerans - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_1647

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1647

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26993 6.41e-83 253 47 1 252 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0C2V5 1.01e-80 247 48 1 262 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
A1JU91 6.26e-80 245 48 1 262 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P28808 1.26e-79 244 47 1 262 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
B1Q2A8 3.6e-09 60 30 5 143 1 nphR Transcriptional activator NphR Rhodococcus sp.
Q52620 2e-07 52 32 0 82 4 pqrA Probable transcription factor PqrA Proteus vulgaris
P77379 3.48e-07 53 27 3 153 1 rclR RCS-specific HTH-type transcriptional activator RclR Escherichia coli (strain K12)
P0A9E2 6.98e-07 50 34 0 78 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 6.98e-07 50 34 0 78 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 6.98e-07 50 34 0 78 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
O31249 1.07e-06 52 29 0 85 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
B2TVP7 1.19e-06 52 30 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q56143 1.38e-06 49 34 0 78 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
H9L484 1.46e-06 49 28 0 106 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
T2KMF4 3.49e-06 52 37 2 79 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
Q48413 5.89e-06 47 28 0 103 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 5.89e-06 47 28 0 103 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
A7ZUB7 6.52e-06 50 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
B6I4P8 1.1e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
Q83PE0 1.29e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 1.29e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q1R414 1.34e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 1.34e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 1.34e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 1.34e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 1.34e-05 49 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
P0C6D6 1.41e-05 48 23 9 257 1 tcpN TCP pilus virulence regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F384 1.41e-05 48 23 9 257 1 tcpN TCP pilus virulence regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B5YZ43 1.43e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 1.43e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
B1LMU6 1.47e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
B7N2P7 1.55e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
Q0TAF8 1.56e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 1.56e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q31U84 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 1.58e-05 48 29 1 84 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 1.58e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
Q32A70 1.59e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q65Q31 1.62e-05 48 25 1 100 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q8CXW5 1.62e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q3YV71 1.7e-05 48 29 1 84 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
O33813 2.58e-05 48 26 0 93 4 lacR Lactose operon transcription activator Staphylococcus xylosus
Q9HTH5 3.71e-05 48 35 0 67 1 cdhR HTH-type transcriptional regulator CdhR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P07642 4.72e-05 47 27 2 130 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
Q32A71 5.38e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
P09378 6.77e-05 47 28 0 100 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 6.77e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 6.77e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q1R413 6.83e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 6.83e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q83PD9 7.08e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 7.08e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q8X7B3 7.55e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
Q31U83 7.62e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 7.62e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 7.62e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 7.62e-05 47 28 0 100 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
Q05587 7.98e-05 47 28 0 82 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P32326 0.000144 46 31 1 85 4 ureR Urease operon transcriptional activator Escherichia coli
A8AL27 0.00015 45 25 2 127 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A4WG91 0.000168 45 27 1 97 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
A4WG90 0.00019 45 23 6 216 3 rhaR HTH-type transcriptional activator RhaR Enterobacter sp. (strain 638)
B4TPQ9 0.000192 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
Q9HTI4 0.000207 45 29 0 93 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 0.000207 45 29 0 93 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
B4TPR0 0.000208 45 26 3 150 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
G3XCU2 0.000218 45 26 0 102 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28816 0.00022 43 30 0 97 1 tetD Transposon Tn10 TetD protein Escherichia coli
B5FPP5 0.000249 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
B5FPP6 0.000257 45 26 3 150 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
B4TBY3 0.000285 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
P0A2S9 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
B5F0M9 0.000288 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
B5BJG8 0.000293 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 0.000293 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57HG8 0.000321 45 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
B5XZ49 0.000324 45 24 2 127 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
P77634 0.000337 44 23 8 246 4 ybcM Uncharacterized HTH-type transcriptional regulator YbcM Escherichia coli (strain K12)
A9MI64 0.000352 44 23 0 99 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A6TGA9 0.000355 44 24 2 127 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5F0N0 0.000436 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
A9MI63 0.00044 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P40865 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 0.000456 44 32 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
P43459 0.000464 44 29 1 106 4 perA Transcriptional activator PerA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
P43464 0.00049 44 32 1 93 4 aggR Transcriptional activator AggR Escherichia coli
Q8Z2V5 0.000627 44 31 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 0.000627 44 31 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
Q57HG7 0.000639 43 31 0 70 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
P17410 0.000841 43 37 0 59 1 chbR HTH-type transcriptional regulator ChbR Escherichia coli (strain K12)
A6TGB0 0.000868 43 29 0 81 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09670
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 2109559 - 2110395 (strand: 1)
Length 837 (nucleotides) / 278 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1647
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain
PF22200 ExsA N-terminal regulatory domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20968 AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MNTIQCGENTKQDCVIQKLSYFYPQYQILENNQKALYIIRNNALVLQNCTNTITINKDQIIFLQQGNYTIKTLGNEPCETIYIPLSDDFLRNFMSKNSDILSNIDREENFSSAFICFEDSPLIHFCSNGFDYLSSQNCPDTFTQLRIEEMLILLLSSEQGANLMALLRQLSHRQVDRLKIFMEKNHLKNWKLKQFAREFGMGLTTFKELFNHVYGTSPRTWICERRIIYAHQLLLTTEMSIVDISMESGFSSQSYFTQSYHRRFNMTPSKARHLKLKL

Flanking regions ( +/- flanking 50bp)

TTTATTGGTATTAAATACAGTGATACTTATATAATAATTTTGGGCGAAAAATGAATACAATACAATGTGGTGAAAACACTAAACAAGATTGCGTTATTCAAAAACTCTCTTATTTTTATCCGCAATATCAAATATTAGAAAATAACCAAAAAGCTTTATACATAATCAGAAATAATGCGCTGGTATTACAAAACTGCACAAATACAATAACTATTAACAAAGATCAGATTATTTTCTTACAACAAGGAAATTATACCATAAAAACGCTAGGCAATGAGCCTTGTGAAACAATTTATATTCCTCTTTCTGATGATTTCTTAAGAAATTTCATGTCAAAAAATAGTGATATTCTCAGTAATATCGATAGAGAGGAAAATTTCTCATCGGCTTTTATCTGTTTTGAAGATTCACCTCTGATCCATTTTTGTAGTAATGGTTTTGATTATCTTTCTTCACAAAATTGTCCAGATACTTTTACTCAATTACGTATTGAAGAAATGCTCATTCTATTACTTTCTTCCGAACAAGGTGCCAATCTTATGGCGTTACTACGCCAATTAAGTCATAGGCAAGTTGATCGCTTGAAAATATTTATGGAAAAAAACCATCTAAAAAATTGGAAGCTAAAACAGTTTGCTCGCGAGTTTGGTATGGGTCTCACCACATTTAAAGAGTTATTTAATCATGTTTATGGAACATCGCCAAGAACATGGATATGCGAAAGAAGAATTATTTACGCACATCAATTATTATTAACAACAGAAATGAGTATTGTCGATATTTCTATGGAATCAGGATTCTCTAGCCAATCTTACTTTACACAAAGCTATCATCGACGTTTTAATATGACACCGAGTAAAGCGAGACATCTTAAATTAAAATTATAAAAAATCCGACCTATTATCATAATATCATCGTTCAATTCATCGCTAGAATA