Homologs in group_196

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18920 FBDBKF_18920 78.5 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
FBDBKF_20455 FBDBKF_20455 56.6 Morganella morganii S1 tetD Transposon Tn10 TetD protein
EHELCC_18665 EHELCC_18665 78.5 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_18640 NLDBIP_18640 78.5 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_18535 LHKJJB_18535 78.5 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_18270 HKOGLL_18270 78.5 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS19730 PMI_RS19730 45.4 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_196

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_196

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZJU7 6.6e-57 188 36 5 290 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ACI2 2.73e-56 186 35 3 285 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 2.73e-56 186 35 3 285 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 2.73e-56 186 35 3 285 3 rob Right origin-binding protein Escherichia coli O157:H7
P28816 3.1e-50 166 64 0 119 1 tetD Transposon Tn10 TetD protein Escherichia coli
P43463 3.1e-35 127 52 1 119 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
P0A9E2 4.21e-27 105 49 0 100 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 4.21e-27 105 49 0 100 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 4.21e-27 105 49 0 100 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
P77601 9.55e-26 105 35 1 153 5 ykgA Putative HTH-type transcriptional regulator YkgA Escherichia coli (strain K12)
Q56143 1.13e-25 101 48 0 99 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q52620 1.34e-25 102 46 1 104 4 pqrA Probable transcription factor PqrA Proteus vulgaris
H9L484 8.57e-24 96 43 0 103 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q48413 1e-23 96 46 0 100 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 1e-23 96 46 0 100 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
P0ACH7 2.15e-22 93 43 0 101 3 marA Multiple antibiotic resistance protein MarA Shigella flexneri
P0ACH5 2.15e-22 93 43 0 101 1 marA Multiple antibiotic resistance protein MarA Escherichia coli (strain K12)
P0ACH6 2.15e-22 93 43 0 101 3 marA Multiple antibiotic resistance protein MarA Escherichia coli O157:H7
P0A2S4 2.36e-22 93 44 0 99 2 marA Multiple antibiotic resistance protein MarA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S5 2.36e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella typhi
P0A2S6 2.36e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella enteritidis
P55922 5.83e-21 89 41 0 100 4 ramA Transcriptional activator RamA Enterobacter cloacae
P26950 9e-19 88 28 9 291 4 caf1R F1 operon positive regulatory protein Yersinia pestis
O31456 6.9e-14 74 40 0 103 3 ybfP Uncharacterized HTH-type transcriptional regulator YbfP Bacillus subtilis (strain 168)
P96662 3.4e-13 72 35 0 101 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
Q8ZM00 7.23e-11 65 31 1 111 1 STM3175 Probable HTH-type transcriptional regulator STM3175 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O32071 1.8e-09 62 33 0 106 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
Q65Q30 2.36e-09 60 29 1 111 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q05587 1.99e-08 58 27 0 104 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P19219 6.32e-07 52 32 0 96 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
Q936F1 8.17e-07 53 28 0 98 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
A4WG91 1.23e-06 52 29 0 105 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
Q65Q31 1.29e-06 52 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B7LVD8 1.3e-06 52 29 1 116 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q6GKK1 1.3e-06 53 30 0 92 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q6GD21 1.45e-06 53 30 0 92 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 1.45e-06 53 30 0 92 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 1.58e-06 53 30 0 92 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 1.58e-06 53 30 0 92 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q5HJR8 1.65e-06 53 30 0 92 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
B6I4P8 2.81e-06 51 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
Q83PE0 4.96e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 4.96e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q31U84 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
Q1R414 5.14e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 5.14e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P09377 5.14e-06 50 29 1 112 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A1AI82 5.14e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
A8A709 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7NUA1 5.14e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7L9G1 5.14e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B7MI37 5.14e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
Q32A70 5.43e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
B1LMU6 5.43e-06 50 29 0 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
Q0TAF8 5.53e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 5.53e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q3YV71 5.79e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
B7N2P7 5.84e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
Q8CXW5 5.95e-06 50 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A7ZUB7 6.83e-06 50 28 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
B5XZ49 8.58e-06 50 27 1 117 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
B4TPQ9 9.75e-06 50 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B2TVP7 1.07e-05 49 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B5YZ43 1.07e-05 49 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 1.07e-05 49 29 1 112 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
C6DJR5 1.13e-05 49 25 1 114 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B5BJG8 1.19e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 1.19e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P45008 1.26e-05 49 26 0 83 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B5FPP5 1.27e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
A8AL27 1.29e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A6TGA9 1.32e-05 49 27 1 117 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A9MI64 1.36e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P0A2S9 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 1.37e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
B5F0M9 1.38e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
B4TBY3 1.39e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
Q57HG8 1.51e-05 49 27 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
Q6DA21 1.51e-05 49 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P0ACH8 2.2e-05 48 31 1 104 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 2.2e-05 48 31 1 104 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9WW32 2.75e-05 48 27 2 119 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
B1JNC4 5.76e-05 47 26 0 96 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66FF1 5.81e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 5.81e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TRS7 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 6.25e-05 47 33 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
G3XCU2 8.82e-05 47 29 0 98 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0ACI3 0.000144 46 30 0 92 1 xylR Xylose operon regulatory protein Escherichia coli (strain K12)
P0ACI4 0.000144 46 30 0 92 3 xylR Xylose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACI5 0.000144 46 30 0 92 3 xylR Xylose operon regulatory protein Escherichia coli O157:H7
Q05092 0.000177 44 28 1 96 4 xylS2 XylDLEGF operon transcriptional activator 2 Pseudomonas putida
A6TGB0 0.000184 45 29 0 82 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q47129 0.000267 45 30 3 101 1 feaR Transcriptional activator FeaR Escherichia coli (strain K12)
O31249 0.000274 45 29 0 82 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
B5FPP6 0.000302 45 24 0 104 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
P40408 0.000513 45 25 0 99 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
P07859 0.000702 44 26 1 96 4 xylS XylDLEGF operon transcriptional activator Pseudomonas putida
B4TPR0 0.00076 44 23 0 104 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
Q04710 0.000811 44 26 1 96 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
Q05335 0.000839 44 26 3 115 4 xylS3 XylDLEGF operon transcriptional activator 3 Pseudomonas putida

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13825
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 399088 - 400026 (strand: 1)
Length 939 (nucleotides) / 312 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_196
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain
PF14526 Integron-associated effector binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19056 AraC family transcriptional regulator, transposon Tn10 TetD protein - -

Protein Sequence

MLKHNTATSEPVDLSSVPEKEQDENAFYLSVIKDIILWIEHNLNKSLQLDVVAQRSGYTKWYFQRIFKRFTGLTLAGYIRRRRLTKAATELRLTTKNIGDIALKYQFDSQQSFARRFKAVFEMTPTEYRQSPNWDLNTLQPPLRTDVTALPQPEIVVLNAIPLHEKGYHYLSSLDEIGHLHEEIRCTFWRDFFQLVSPDIQHCYVRTAWDNMADDPEGIAISYYIGVDDTALIRQENQLTPAVISRGKYAKFHFDGLFSDYRDFTFNMYLYSLPQLGLCRRPGLDIEKHTRTEEISDNLPQRLRVDYYIPVL

Flanking regions ( +/- flanking 50bp)

TGTAATCGTATCACAGTATTTTTTTGTGTGCCAATGAGCCGGAAATCCGTATGCTGAAACATAATACCGCCACATCCGAACCCGTTGATTTATCATCAGTTCCGGAGAAAGAACAGGATGAAAATGCCTTTTATCTCAGTGTGATAAAAGACATTATTTTATGGATTGAGCATAACCTGAATAAATCACTGCAACTGGATGTGGTTGCGCAGCGATCCGGTTATACCAAATGGTATTTCCAGCGGATCTTCAAACGATTTACCGGCCTGACACTCGCCGGGTATATCCGCAGGCGTCGTTTGACCAAAGCCGCTACTGAGCTGCGCCTGACCACAAAAAATATCGGGGATATCGCCCTTAAATATCAGTTTGATTCTCAGCAATCCTTTGCCCGGCGTTTTAAAGCGGTGTTTGAGATGACGCCGACAGAGTACCGCCAGAGTCCGAACTGGGATCTGAACACGCTGCAACCCCCGCTGCGCACAGACGTAACCGCGCTGCCACAACCGGAAATTGTGGTTCTGAATGCTATCCCTTTGCATGAAAAGGGTTATCACTATCTGTCATCATTAGATGAAATAGGGCATTTACATGAAGAGATCCGCTGTACATTCTGGCGCGATTTTTTCCAATTAGTCTCACCGGATATTCAGCACTGTTATGTCCGGACCGCCTGGGACAATATGGCCGATGATCCGGAAGGTATTGCTATCAGCTATTATATTGGTGTTGATGATACTGCGTTAATCCGTCAGGAAAATCAGCTCACACCGGCAGTTATCAGCCGTGGGAAATACGCGAAGTTTCATTTTGATGGTTTATTCAGTGATTACCGCGACTTTACCTTCAATATGTATCTTTACTCGTTACCACAGCTCGGATTATGCCGCCGCCCCGGTCTTGATATTGAAAAACATACCCGCACAGAAGAAATAAGTGACAATCTGCCGCAGCGGCTGCGGGTCGATTACTATATTCCTGTCCTCTGAGTTATACCCTTATTCATTCAAACCGCAGGTTCGCTGGCTACACTCAGCCA