Homologs in group_34

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13325 FBDBKF_13325 30.7 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08770 EHELCC_08770 30.7 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09095 NLDBIP_09095 30.7 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05170 LHKJJB_05170 30.7 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05745 HKOGLL_05745 30.7 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS01705 F4V73_RS01705 29.7 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS03430 F4V73_RS03430 33.3 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS04165 F4V73_RS04165 21.8 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS04870 F4V73_RS04870 21.0 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS12525 F4V73_RS12525 27.0 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS17025 F4V73_RS17025 27.1 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS04495 PMI_RS04495 26.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS05115 PMI_RS05115 30.7 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS18315 PMI_RS18315 19.9 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_34

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_34

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17410 1.03e-157 443 75 0 275 1 chbR HTH-type transcriptional regulator ChbR Escherichia coli (strain K12)
P96660 1.5e-08 58 25 10 256 4 ydeC Uncharacterized HTH-type transcriptional regulator YdeC Bacillus subtilis (strain 168)
O34901 4.68e-07 53 23 6 243 4 yobQ Uncharacterized HTH-type transcriptional regulator YobQ Bacillus subtilis (strain 168)
O87389 1.19e-06 52 32 0 79 4 glxA HTH-type transcriptional regulator GlxA Rhizobium meliloti (strain 1021)
Q936F1 1.28e-06 53 25 5 190 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
Q6GD21 3.43e-06 51 25 5 190 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 3.43e-06 51 25 5 190 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 3.72e-06 51 25 5 190 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 3.72e-06 51 25 5 190 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
O31449 4.81e-06 50 26 11 247 4 ybfI Uncharacterized HTH-type transcriptional regulator YbfI Bacillus subtilis (strain 168)
Q6GKK1 6.27e-06 50 25 5 190 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q5HJR8 9.58e-06 50 25 5 190 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
P40331 1.65e-05 48 35 0 71 4 yisR Uncharacterized HTH-type transcriptional regulator YisR Bacillus subtilis (strain 168)
Q65Q31 2.2e-05 48 24 6 244 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q32A71 7.93e-05 47 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q56143 9.16e-05 44 35 0 77 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P40408 0.00012 47 29 0 82 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
A9MI63 0.000127 46 22 7 252 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P09378 0.000129 46 23 6 246 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 0.000129 46 23 6 246 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 0.000129 46 23 6 246 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q8X7B3 0.000192 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
P0A9E2 0.000192 43 35 0 77 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 0.000192 43 35 0 77 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 0.000192 43 35 0 77 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
P0ACH8 0.000196 45 39 0 63 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 0.000196 45 39 0 63 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q31U83 0.000203 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 0.000203 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 0.000203 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 0.000203 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83PD9 0.000241 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 0.000241 45 22 7 243 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q1R413 0.00025 45 23 6 246 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 0.00025 45 23 6 246 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
P43463 0.000393 43 32 0 82 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
P43465 0.000453 44 31 0 74 4 rafR Raffinose operon transcriptional regulatory protein RafR Pediococcus pentosaceus
P35319 0.000481 44 26 0 83 4 None Putative AraC-like transcription regulator Streptomyces lividans
T2KMF4 0.000633 45 32 1 78 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
P45008 0.000667 44 27 0 84 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14600
Feature type CDS
Gene chbR
Product transcriptional regulator ChbR
Location 3236648 - 3237496 (strand: -1)
Length 849 (nucleotides) / 282 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_34
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF07883 Cupin domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03490 AraC family transcriptional regulator, dual regulator of chb operon - -

Protein Sequence

MMHSLKAQAEIRMVYENQLFNGKNFHVFIYNKTESVSGLHQHDYYEFTIVLTGRYYQEINGKKVLLERGDFVFIPIGSHHQSFYDFGVTRILNVGISKAFFDKHYLPLLPAYFVASQVYALKNEFLSYIESVISSLNFRHTEFNEFIEIVTFNVVNRLRHYRDDGIEDDIPLWLKDAIDGMHDKSRFGENALANMVQLSGKSQEYLTRATRRYYDKTPMQIIHDIRINFAKKQLEITNYSVTDIAFDAGYSSPSLFIKTFKKITSLTPNSYRKNLYSIKETN

Flanking regions ( +/- flanking 50bp)

CTTGTCACAGAGCTTATCGAGTTACATGAAAAAATAAAGTAAGGCGAATGATGATGCACTCATTAAAAGCGCAAGCTGAAATACGCATGGTATATGAAAACCAATTATTTAATGGTAAGAATTTTCATGTGTTTATTTATAACAAAACAGAAAGCGTCAGTGGGTTGCATCAGCATGATTATTATGAATTTACTATTGTTTTAACAGGGCGCTATTATCAAGAAATTAACGGTAAAAAGGTGTTATTAGAGCGTGGTGATTTTGTCTTTATTCCTATTGGCTCGCATCATCAAAGTTTTTATGACTTTGGTGTAACTCGTATTTTAAATGTGGGAATAAGCAAAGCTTTTTTTGATAAACATTATCTTCCTTTATTGCCCGCTTATTTTGTTGCTTCTCAAGTTTATGCATTAAAAAATGAGTTTCTTTCTTATATTGAATCCGTGATTAGCTCATTAAATTTCAGACATACAGAATTTAATGAATTTATTGAAATTGTCACCTTTAATGTGGTGAATAGATTACGACATTATAGAGATGATGGTATTGAAGATGATATTCCCTTATGGCTAAAAGACGCCATTGATGGAATGCATGATAAAAGCCGATTTGGGGAAAATGCATTGGCAAATATGGTGCAATTATCTGGAAAATCGCAAGAGTATTTAACTCGAGCAACTCGCCGTTATTATGATAAAACGCCGATGCAAATTATTCATGATATTCGAATTAATTTTGCTAAAAAACAATTAGAAATTACGAATTACTCCGTCACCGATATTGCTTTTGATGCAGGTTATAGTAGCCCGAGCTTATTTATTAAGACTTTTAAGAAGATAACATCGCTCACACCAAATAGTTATAGAAAGAATTTATACAGTATTAAAGAGACTAACTAATTTATAATTAAGCGTAAAAAGTAATCAATAATATCAATTGATTTTTATTA