Homologs in group_406

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16410 FBDBKF_16410 33.6 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08275 EHELCC_08275 33.6 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_08600 NLDBIP_08600 33.6 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05665 LHKJJB_05665 33.6 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05250 HKOGLL_05250 33.6 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS02930 F4V73_RS02930 33.6 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS07795 PMI_RS07795 37.3 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_406

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_406

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACI3 0.0 565 67 2 387 1 xylR Xylose operon regulatory protein Escherichia coli (strain K12)
P0ACI4 0.0 565 67 2 387 3 xylR Xylose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACI5 0.0 565 67 2 387 3 xylR Xylose operon regulatory protein Escherichia coli O157:H7
P45043 1.4e-164 469 57 1 383 3 xylR Xylose operon regulatory protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P07642 3.11e-11 67 35 0 101 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
G3XCU2 1.41e-09 62 31 0 104 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9WW32 7.28e-09 60 33 0 83 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
P25144 9.85e-08 57 24 9 227 1 ccpA Catabolite control protein A Bacillus subtilis (strain 168)
P43461 1.19e-07 54 37 2 99 4 None Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) Pseudoalteromonas carrageenovora
A9MI63 1.7e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P40865 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
B5F0N0 1.78e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
B5FPP6 1.8e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
B4TPR0 1.92e-07 55 37 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
Q31U83 2.02e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 2.02e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 2.02e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 2.02e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83PD9 2.04e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 2.04e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q1R413 2.08e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 2.08e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q32A71 2.1e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q8X7B3 2.1e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
P09378 2.12e-07 55 32 0 83 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 2.12e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 2.12e-07 55 32 0 83 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
O31249 2.5e-07 55 32 0 103 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q57HG7 2.52e-07 55 35 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
Q8Z2V5 2.74e-07 55 35 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 2.74e-07 55 35 0 67 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
Q66FF1 3.69e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 3.69e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4WG91 3.87e-07 54 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
A4TRS7 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 3.89e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
B1JNC4 4e-07 54 35 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
B4TPQ9 4.87e-07 54 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B5BJG8 5.95e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 5.95e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5F0M9 6.06e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
P0A2S9 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 6.23e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
B4TBY3 6.29e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
A4WG90 6.39e-07 53 30 0 80 3 rhaR HTH-type transcriptional activator RhaR Enterobacter sp. (strain 638)
A9MI64 6.52e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q57HG8 6.76e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
B5FPP5 7.01e-07 53 25 0 102 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
Q3YV71 7.61e-07 53 22 10 274 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
Q52620 1.14e-06 50 33 0 86 4 pqrA Probable transcription factor PqrA Proteus vulgaris
Q00753 1.15e-06 53 30 0 107 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q0TAF8 1.21e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 1.21e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q65Q30 1.22e-06 53 34 0 73 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q83PE0 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q31U84 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 1.23e-06 53 26 0 83 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 1.23e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
Q8CXW5 1.26e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B1LMU6 1.3e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
B7N2P7 1.33e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
B5YZ43 1.34e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 1.34e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
Q32A70 1.42e-06 53 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q8FCI6 1.47e-06 52 30 1 75 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P40408 1.5e-06 53 29 1 107 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
Q9EYV5 1.52e-06 52 30 1 75 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O127:H6 (strain E2348/69 / EPEC)
O33813 1.56e-06 52 26 3 172 4 lacR Lactose operon transcription activator Staphylococcus xylosus
A8AL27 1.61e-06 52 23 0 102 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B1Q2A8 1.7e-06 53 28 3 118 1 nphR Transcriptional activator NphR Rhodococcus sp.
B5XZ49 1.7e-06 52 24 0 102 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
B7LVD8 1.76e-06 52 25 0 86 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q1R414 1.81e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 1.81e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 1.81e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 1.81e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 1.81e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
Q9HTI4 2.08e-06 53 29 0 100 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 2.08e-06 53 29 0 100 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
A6TGA9 2.93e-06 52 24 0 102 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B2TVP7 3.01e-06 52 26 0 83 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
A7ML57 3.43e-06 52 33 0 69 3 rhaR HTH-type transcriptional activator RhaR Cronobacter sakazakii (strain ATCC BAA-894)
A6TGB0 3.52e-06 51 28 0 83 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P35319 4.55e-06 51 25 0 104 4 None Putative AraC-like transcription regulator Streptomyces lividans
B1JNC5 4.73e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS8 4.73e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis (strain Pestoides F)
B2K1W5 4.73e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FN80 4.73e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A7ZUB7 4.84e-06 51 25 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
A9QYR8 4.86e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Angola)
Q05587 4.87e-06 51 23 3 183 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77379 4.87e-06 51 32 0 81 1 rclR RCS-specific HTH-type transcriptional activator RclR Escherichia coli (strain K12)
Q66FF2 4.91e-06 51 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype I (strain IP32953)
B6I4P8 4.97e-06 51 25 0 83 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
P0A9E0 7.65e-06 50 27 1 117 1 araC Arabinose operon regulatory protein Escherichia coli (strain K12)
P0A9E1 7.65e-06 50 27 1 117 3 araC Arabinose operon regulatory protein Escherichia coli O157:H7
Q03320 1.09e-05 50 25 0 104 4 None Putative AraC-like transcription regulator Streptomyces antibioticus
Q1CEB5 1.23e-05 50 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZJ00 1.23e-05 50 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis
Q1C0W1 1.23e-05 50 22 0 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Antiqua)
P11765 1.3e-05 50 27 1 117 3 araC Arabinose operon regulatory protein Citrobacter freundii
P76135 1.41e-05 49 32 2 84 2 ydeO HTH-type transcriptional regulator YdeO Escherichia coli (strain K12)
Q83RF4 1.43e-05 49 32 2 84 3 ydeO HTH-type transcriptional regulator YdeO Shigella flexneri
Q8FHG0 1.5e-05 49 32 2 84 3 ydeO HTH-type transcriptional regulator YdeO Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X4Z9 1.55e-05 49 32 2 84 3 Z2209 HTH-type transcriptional regulator YdeO Escherichia coli O157:H7
P54722 1.67e-05 50 31 1 89 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
P77396 2.26e-05 49 23 1 99 4 ypdC Uncharacterized HTH-type transcriptional regulator YpdC Escherichia coli (strain K12)
P58230 2.51e-05 49 29 1 75 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O157:H7
P36944 2.57e-05 49 27 6 187 4 rbsR Ribose operon repressor Bacillus subtilis (strain 168)
Q83PR0 2.83e-05 48 29 1 75 3 gadX HTH-type transcriptional regulator GadX Shigella flexneri
P43464 2.88e-05 48 32 1 77 4 aggR Transcriptional activator AggR Escherichia coli
P37639 3.04e-05 48 29 1 75 1 gadX HTH-type transcriptional regulator GadX Escherichia coli (strain K12)
P31766 3.11e-05 49 25 5 173 4 galR HTH-type transcriptional regulator GalR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P03022 3.27e-05 48 28 1 107 3 araC Arabinose operon regulatory protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
C6DJR5 3.29e-05 48 26 0 83 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q9HTH5 4.15e-05 48 24 0 105 1 cdhR HTH-type transcriptional regulator CdhR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q6DA21 4.36e-05 48 23 1 111 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
T2KMF4 5.8e-05 49 34 0 75 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
P05052 6.35e-05 47 21 9 219 1 appY HTH-type transcriptional regulator AppY Escherichia coli (strain K12)
P43459 7.45e-05 47 31 1 101 4 perA Transcriptional activator PerA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
P19219 7.99e-05 47 31 0 92 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
P0CL08 8.79e-05 47 32 1 81 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WAC0 8.79e-05 47 32 1 81 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain SL1344)
O31522 0.000114 48 34 1 83 2 yesS HTH-type transcriptional regulator YesS Bacillus subtilis (strain 168)
Q02458 0.000126 47 31 1 83 1 ureR Urease operon transcriptional activator Proteus mirabilis (strain HI4320)
P25393 0.000135 47 31 1 77 1 cfaD CFA/I fimbrial subunit D Escherichia coli
Q9CF41 0.000158 47 36 2 82 3 rbsR Ribose operon repressor Lactococcus lactis subsp. lactis (strain IL1403)
P16114 0.000173 46 32 1 77 1 rns Regulatory protein Rns Escherichia coli
P96660 0.000208 46 26 0 99 4 ydeC Uncharacterized HTH-type transcriptional regulator YdeC Bacillus subtilis (strain 168)
Q9KBQ0 0.000231 46 36 1 71 3 araR Arabinose metabolism transcriptional repressor Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P45008 0.000273 46 28 0 80 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45831 0.000319 46 21 10 251 4 regA HTH-type transcriptional regulator RegA Clostridium saccharobutylicum
Q56143 0.000319 43 33 0 71 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43465 0.000388 45 29 0 95 4 rafR Raffinose operon transcriptional regulatory protein RafR Pediococcus pentosaceus
P32326 0.000395 45 26 1 104 4 ureR Urease operon transcriptional activator Escherichia coli
P0ACH8 0.000491 45 27 0 98 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 0.000491 45 27 0 98 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9S470 0.000676 45 27 3 118 3 araR Arabinose metabolism transcriptional repressor Geobacillus stearothermophilus
Q9K6K2 0.000802 44 21 4 184 3 rbsR Ribose operon repressor Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P33234 0.000811 44 33 1 74 2 adiY HTH-type transcriptional regulator AdiY Escherichia coli (strain K12)
P0A9E2 0.000852 42 32 0 71 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 0.000852 42 32 0 71 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 0.000852 42 32 0 71 3 soxS Regulatory protein SoxS Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06165
Feature type CDS
Gene -
Product XylR family transcriptional regulator
Location 1352991 - 1354160 (strand: 1)
Length 1170 (nucleotides) / 389 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_406
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF12833 Helix-turn-helix domain
PF13377 Periplasmic binding protein-like domain
PF22177 XylR N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1609 Transcription (K) K DNA-binding transcriptional regulator, LacI/PurR family

Protein Sequence

MKKDKYFRIVLLFNANKVYDRQVVEGVGEYLQASQCHWDVFIEEDFRTRLDNINHWVCDGIIADFDDPIITQHLSQSPLSVIGVGGSYHQAKDYPSVPYIATDNYQLIHQAFLHLKQKGLKHFAFYGLPAKNYPHWSNEREYAFRQLVTREKYPGIIYNGMDITQENWQHAQNRLSDWIQTLPPQTGIIAVTDARARHLLQVCDNLNINVPEEISIIGIDDEDMTRYLSRIALSSVVQGSRQMGYLAAKLLHQILEGHPTEQLPRILVPPVKIIERRSTDFHSFSDPTVVQAMHYIYYNACKGIKTEQVLDAVNMSRSNLEQRFKKEVGKTIHAVIYEEKLKRAKNLLATTTLSIQEISLMCGYPSLQYFYSIFKKEFGMTPKDFRDEN

Flanking regions ( +/- flanking 50bp)

AATACAAAGCTGTGGTTTAATGGCCAACATGGAAGAGTGGGTGATCTAATATGAAAAAAGATAAATATTTTCGTATCGTGCTGTTATTCAACGCTAATAAAGTCTATGACCGACAAGTTGTTGAAGGGGTAGGTGAATACTTGCAGGCGTCACAGTGCCATTGGGATGTATTTATTGAAGAAGATTTCCGCACTCGCCTTGATAATATTAATCATTGGGTTTGTGACGGCATTATTGCAGACTTTGACGATCCCATTATTACTCAACATTTAAGCCAATCACCCTTATCTGTTATTGGTGTCGGTGGCTCTTATCATCAAGCAAAAGATTATCCTTCTGTGCCGTATATTGCTACTGATAATTACCAATTGATTCATCAAGCTTTTTTACATTTAAAGCAAAAAGGGCTTAAACATTTTGCTTTTTATGGATTACCGGCAAAAAACTACCCGCATTGGTCTAATGAGAGAGAATATGCATTCCGGCAATTAGTTACTCGCGAAAAATACCCTGGCATCATTTATAACGGTATGGATATCACACAAGAGAATTGGCAACATGCACAGAATCGTTTATCTGACTGGATACAAACGTTGCCACCACAAACTGGTATTATTGCCGTCACCGATGCCAGAGCGCGTCATTTACTGCAAGTCTGTGATAACTTAAATATTAATGTGCCTGAAGAAATCAGTATTATAGGCATTGATGATGAAGATATGACACGTTATTTATCACGTATAGCGTTATCTTCTGTAGTACAAGGTTCACGACAAATGGGATATTTAGCCGCGAAGCTTCTGCATCAAATATTAGAAGGGCATCCAACCGAACAACTACCAAGAATATTAGTTCCTCCAGTAAAAATCATTGAACGTCGCTCAACAGACTTTCATTCATTTAGTGATCCTACCGTTGTACAAGCAATGCACTATATTTATTACAATGCTTGTAAAGGAATAAAAACTGAGCAAGTGTTAGACGCTGTAAATATGTCGCGTTCTAATTTAGAACAGCGTTTTAAGAAAGAAGTAGGGAAGACTATCCATGCCGTGATTTATGAAGAGAAGCTGAAAAGGGCGAAAAACTTATTAGCCACAACAACATTATCAATACAAGAGATTTCTTTGATGTGTGGCTATCCGTCGTTACAATATTTTTACTCTATTTTTAAAAAAGAGTTTGGCATGACACCAAAGGATTTTAGAGATGAGAATTAATAAAAATAACAATTATTTTTTATAGCGACTATTTGCCCAAGGATCACTTT