Homologs in group_1574

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09850 FBDBKF_09850 83.9 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_04650 EHELCC_04650 83.9 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_04650 NLDBIP_04650 83.9 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_13980 LHKJJB_13980 83.9 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_12555 HKOGLL_12555 83.9 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS02770 PMI_RS02770 58.5 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1574

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1574

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 5.96e-28 110 29 3 228 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
Q8NRR3 5.95e-08 56 31 1 103 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q6NI56 1.54e-07 55 27 2 126 3 ripA HTH-type transcriptional regulator RipA Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q8FQS2 1.1e-06 52 31 0 79 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q5HKE0 7.47e-05 46 24 0 77 3 SERP2406 Uncharacterized response regulatory protein SERP2406 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CQE3 8.66e-05 46 28 0 63 3 SE_0165 Uncharacterized response regulatory protein SE_0165 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P54722 0.000136 45 30 2 96 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
B1JNC4 0.000386 44 30 2 81 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66FF1 0.000408 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 0.000408 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TRS7 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 0.000431 44 33 1 69 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
P0C2V5 0.000461 44 24 7 243 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00495
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 104430 - 105194 (strand: 1)
Length 765 (nucleotides) / 254 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1574
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02311 AraC-like ligand binding domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MAWLKQHDPFNADLHTAPLVGIAAEMAAQHDSGFHQHQRGQFLFTERGAIRITLTDTLSVLPPTRIAWIPPAMPHRVQMFEAVGYRSLYPDAQLSAQLPATCEIMDISPLLREILFLFAQLPFDSDWTQPRLLHLLAVFLDELAIAGREPMRLPLPTDRRLSGLDTHTLPPPLNELAGRCGAGDKTITRIFRRETGLSYQQWRQQWRLIKSVELLAKKYRYSYIAQELGFTSDSAFVSFFRGMTGKTPGDYMGK

Flanking regions ( +/- flanking 50bp)

AAATGTCTTATTATAATAATAAGGACAGTTTGTTTATCAAAAGGGACAATATGGCGTGGCTGAAACAACATGACCCGTTTAATGCCGATCTGCATACAGCACCGCTTGTCGGGATCGCCGCTGAAATGGCGGCACAGCATGACTCCGGTTTTCATCAGCATCAGCGGGGACAGTTTTTGTTTACGGAGCGGGGCGCTATCAGGATAACGCTGACGGATACCTTGTCTGTACTGCCGCCGACGCGAATTGCGTGGATCCCGCCGGCAATGCCGCACCGGGTGCAGATGTTTGAAGCAGTGGGTTACCGATCCCTCTATCCGGATGCACAGCTCAGCGCGCAGTTACCGGCGACCTGTGAAATTATGGATATTTCGCCGTTGTTGCGGGAAATTCTGTTCTTGTTTGCACAACTACCGTTTGACAGTGACTGGACGCAGCCGCGTTTACTTCATTTACTTGCTGTGTTTCTTGATGAACTGGCAATTGCCGGACGGGAGCCGATGAGGCTGCCATTACCAACTGATCGGCGGCTGAGTGGTCTGGATACACACACATTGCCGCCGCCACTGAATGAACTGGCGGGTCGCTGTGGTGCGGGTGACAAAACCATTACACGGATTTTCCGGCGCGAAACCGGGCTGAGTTATCAGCAGTGGCGTCAGCAGTGGAGATTGATTAAATCTGTTGAACTGTTGGCTAAAAAGTACCGTTACAGCTATATCGCTCAGGAGCTGGGTTTTACCAGTGACAGTGCGTTTGTGTCATTCTTCAGGGGAATGACAGGGAAAACGCCCGGGGATTATATGGGAAAATGAATAAAAATAAGATAATTATGAATAAAAAACCCTCCTGAGAGGGTTTTATT