Homologs in group_2704

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06570 FBDBKF_06570 47.3 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_09615 EHELCC_09615 47.3 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09995 NLDBIP_09995 47.3 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_07760 LHKJJB_07760 47.3 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_07310 HKOGLL_07310 47.3 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins

Distribution of the homologs in the orthogroup group_2704

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2704

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q05587 2.07e-06 51 32 0 79 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P32677 0.000359 45 34 0 83 4 yijO Uncharacterized HTH-type transcriptional regulator YijO Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06035
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 1322515 - 1323360 (strand: 1)
Length 846 (nucleotides) / 281 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2704
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18954 AraC family transcriptional regulator, transcriptional activator of pobA - -

Protein Sequence

MFSQSLLKLNIPSEYAVIGESDMHNELGYPLALSYVVVIICLDGRAVINIDFQTKTIKANDIVILGDDRMVTLQRKSANFRIFYCFLKKSFASEIAYALSNSLFTFLHENPICRPSTAHLNAINNWVEQLKYIDKSYTDHRKLMLRGQLQNLFFAITELIPSHYSLSKKEFSRKEHLCWQFWELVIKHSHQHRDVAYYANRLSITPFYLSQLTKQYFNDVPKTLINRQVILKIKALLTHTTLSVNEIAIKLHFDDPSYLCRYFKRETDCSLSGYRQQYQRQ

Flanking regions ( +/- flanking 50bp)

AGATCATTAAAAATAAAAACAGTAGCAATATGCAATAGAGTGAATAATTTATGTTTAGTCAATCATTATTAAAGTTAAATATCCCTTCGGAGTATGCCGTTATTGGTGAAAGCGATATGCATAATGAATTAGGCTATCCATTAGCATTATCTTATGTTGTGGTTATTATTTGTTTAGATGGCAGGGCTGTTATTAATATAGATTTTCAAACAAAAACCATTAAAGCGAATGATATAGTGATACTCGGTGATGATAGAATGGTCACATTGCAACGTAAATCAGCTAATTTTCGTATTTTTTATTGTTTTCTTAAGAAATCTTTTGCCTCTGAGATCGCTTATGCACTTTCAAATAGTTTGTTTACATTTTTGCATGAAAACCCCATTTGTCGCCCTTCAACGGCTCACTTAAACGCCATAAACAATTGGGTGGAACAATTAAAATATATAGATAAAAGTTATACTGATCATAGAAAGTTAATGTTGAGAGGGCAGTTACAAAATCTTTTTTTTGCGATAACAGAATTAATACCATCTCATTATTCCTTATCTAAAAAAGAATTCAGCCGTAAAGAGCACTTATGTTGGCAATTTTGGGAGTTAGTTATAAAACATAGCCACCAGCACAGAGACGTTGCCTATTATGCAAATCGCCTTAGCATCACACCGTTTTATCTATCACAGCTCACTAAACAATATTTTAATGATGTTCCTAAGACGCTGATTAATAGGCAAGTAATTCTTAAAATAAAAGCGTTATTGACGCACACTACGCTATCAGTAAATGAGATCGCCATAAAACTCCATTTTGACGATCCCTCATATCTATGCCGTTATTTTAAGCGCGAGACTGATTGTTCCTTATCTGGATATCGCCAACAATATCAACGGCAATAAAATATATTAAGCAGCTATTCTTTTTTCACTGTAGTTCATACCTTGCAGCA