Orthogroup:group_401


Homologs in group_401

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8 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16080 FBDBKF_16080 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_16115 EHELCC_16115 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_17225 NLDBIP_17225 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_17145 LHKJJB_17145 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_16695 HKOGLL_16695 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS10995 PMI_RS10995 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator
PMI_RS13430 PMI_RS13430 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator
PMI_RS14640 PMI_RS14640 Proteus mirabilis HI4320 - TetR family transcriptional regulator

Distribution of group_401 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_401 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_401

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_401.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 acrR 5
2 - 3

Product

# Product Occurence
1 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA 5
2 TetR/AcrR family transcriptional regulator 2
3 TetR family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 7 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
COG3226 1 K Transcription (K) DNA-binding transcriptional regulator YbjK

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 8 Bacterial regulatory proteins, tetR family
PF17937 2 Tetracyclin repressor-like, C-terminal domain

Annotations of the 57 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator BetI 16
HTH-type transcriptional regulator CymR 1
HTH-type transcriptional regulator LmrA 1
HTH-type transcriptional regulator MW2498 1
HTH-type transcriptional regulator MtrR 1
HTH-type transcriptional regulator SA2364 1
HTH-type transcriptional regulator SAB2452 1
HTH-type transcriptional regulator SACOL2593 1
HTH-type transcriptional regulator SAOUHSC_02897 1
HTH-type transcriptional regulator SAR2658 1
HTH-type transcriptional regulator SAS2464 1
HTH-type transcriptional regulator SAUSA300_2515 1
HTH-type transcriptional regulator SAV2578 1
HTH-type transcriptional regulator SrpR 1
HTH-type transcriptional regulator TtgR 1
HTH-type transcriptional regulator UidR 4
HTH-type transcriptional repressor KstR2 3
Nucleoid occlusion factor SlmA 10
Probable HTH-type transcriptional regulator ArpR 1
Probable HTH-type transcriptional regulator TtgR 1
Transcriptional repressor Mce3R 1
Transposon Tn10 TetC protein 1
Uncharacterized HTH-type transcriptional regulator MT1294 1
Uncharacterized HTH-type transcriptional regulator Rv1255c 1
Uncharacterized HTH-type transcriptional regulator TtgW 1
Uncharacterized HTH-type transcriptional regulator YxaF 1
Uncharacterized HTH-type transcriptional regulator in lacX 3'region 1
Uncharacterized HTH-type transcriptional regulator pXO2-48/BXB0055/GBAA_pXO2_0055 1

Protein length

Min length 183
Max length 197
Mean length (sd) 195.0 (4.9)
Median length 197.0

Protein length distribution