Orthogroup:group_400


Homologs in group_400

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16055 FBDBKF_16055 Morganella morganii S1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
EHELCC_18660 EHELCC_18660 Morganella morganii S2 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
NLDBIP_17490 NLDBIP_17490 Morganella morganii S4 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
LHKJJB_17170 LHKJJB_17170 Morganella morganii S3 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
HKOGLL_17225 HKOGLL_17225 Morganella morganii S5 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
F4V73_RS16215 F4V73_RS16215 Morganella psychrotolerans ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
PMI_RS00230 PMI_RS00230 Proteus mirabilis HI4320 - bifunctional metallophosphatase/5'-nucleotidase
PMI_RS10730 PMI_RS10730 Proteus mirabilis HI4320 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA

Distribution of group_400 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_400 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_400

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_400.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ushA 7
2 - 1

Product

# Product Occurence
1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA 7
2 bifunctional metallophosphatase/5'-nucleotidase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0737 8 FV Nucleotide transport and metabolism (F)
Defense mechanisms (V)		 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00149 8 Calcineurin-like phosphoesterase
PF02872 8 5'-nucleotidase, C-terminal domain

Annotations of the 33 SwissProt hits

Annotation Number of occurrences
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase 4
5'-nucleotidase 8
Apyrase 3
Cell wall protein Lmo0130 1
Endonuclease YhcR 1
Mannosylglucosyl-3-phosphoglycerate phosphatase 1
NAD 5'-nucleotidase 1
Probable 5'-nucleotidase 1
Protein 5NUC 1
Protein 5NUC (Fragment) 1
Protein UshA 3
Silent protein UshA(0) 1
Snake venom 5'-nucleotidase 2
Snake venom 5'-nucleotidase (Fragment) 2
Trifunctional nucleotide phosphoesterase protein YfkN 1
Uncharacterized metallophosphoesterase YunD 1
Uncharacterized protein in pqq-V 5'region (Fragment) 1

Protein length

Min length 540
Max length 555
Mean length (sd) 553.0 (5.3)
Median length 555.0

Protein length distribution