Orthogroup:group_400


Homologs in group_400

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06550 FBDBKF_06550 Morganella morganii S1 robA MDR efflux pump AcrAB transcriptional activator RobA
EHELCC_09595 EHELCC_09595 Morganella morganii S2 robA MDR efflux pump AcrAB transcriptional activator RobA
NLDBIP_09975 NLDBIP_09975 Morganella morganii S4 robA MDR efflux pump AcrAB transcriptional activator RobA
LHKJJB_07780 LHKJJB_07780 Morganella morganii S3 robA MDR efflux pump AcrAB transcriptional activator RobA
HKOGLL_07330 HKOGLL_07330 Morganella morganii S5 robA MDR efflux pump AcrAB transcriptional activator RobA
F4V73_RS15385 F4V73_RS15385 Morganella psychrotolerans robA MDR efflux pump AcrAB transcriptional activator RobA
PMI_RS18495 PMI_RS18495 Proteus mirabilis HI4320 robA MDR efflux pump AcrAB transcriptional activator RobA

Distribution of group_400 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_400 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_400

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_400.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 robA 7

Product

# Product Occurence
1 MDR efflux pump AcrAB transcriptional activator RobA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 6 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins
COG4977 1 K Transcription (K) Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05804 7 AraC family transcriptional regulator, mar-sox-rob regulon activator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06445 6 GyrI-like small molecule binding domain
PF12833 7 Helix-turn-helix domain
PF14526 1 Integron-associated effector binding protein

Annotations of the 159 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
F1 operon positive regulatory protein 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 40
HTH-type transcriptional activator RhaS 53
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Putative HTH-type transcriptional regulator YkgA 1
Regulatory protein PocR 1
Regulatory protein SoxS 4
Right origin-binding protein 3
Thermoregulatory protein LcrF 1
Transcriptional activator FeaR 1
Transcriptional activator RamA 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1
Virulence regulon transcriptional activator VirF 1
XylDLEGF operon transcriptional activator 3 1
Xylose operon regulatory protein 3

Protein length

Min length 300
Max length 306
Mean length (sd) 304.9 (2.3)
Median length 306.0

Protein length distribution